Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 0.0e+00 1118.2 570 100.0
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.5e-181 640.2 472 65.7
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 2.2e-180 636.3 552 58.5
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.1e-179 634.0 473 64.7
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 1.7e-177 626.7 478 63.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 8.6e-177 624.4 478 63.0
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 5.6e-176 621.7 474 63.5
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 9.5e-176 620.9 474 62.7
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.2e-173 614.0 472 62.1
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.0e-173 613.2 477 61.4
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.0e-173 613.2 552 57.1
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.6e-173 612.8 478 62.8
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 5.8e-173 611.7 562 56.2
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.9e-173 610.9 472 61.7
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 3.7e-172 609.0 558 56.6
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.9e-171 606.7 556 55.8
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 3.2e-171 605.9 479 61.8
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 4.1e-171 605.5 469 61.6
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 4.1e-171 605.5 473 62.6
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 4.1e-171 605.5 480 60.6
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.4e-171 605.1 472 61.4
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 5.4e-171 605.1 562 56.8
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 7.1e-171 604.7 497 60.0
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 2.7e-170 602.8 556 54.9
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 4.6e-170 602.1 562 56.0
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-169 600.5 487 59.8
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.3e-169 600.5 487 60.2
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 1.1e-168 597.4 551 56.1
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.1e-168 597.4 499 60.9
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.5e-168 597.0 487 60.0
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.9e-168 596.7 485 61.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 2.5e-168 596.3 584 53.3
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 2.5e-168 596.3 562 55.2
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.1e-167 593.2 476 60.9
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.8e-167 592.8 472 61.0
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 2.8e-167 592.8 464 61.9
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.8e-167 592.8 478 59.4
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 3.1e-166 589.3 561 54.2
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 4.0e-166 589.0 476 61.3
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 5.2e-166 588.6 566 55.1
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 6.8e-166 588.2 545 55.2
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 8.9e-166 587.8 506 57.9
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 8.9e-166 587.8 577 52.9
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.2e-165 587.4 477 60.6
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 2.6e-165 586.3 560 56.1
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 3.4e-165 585.9 475 59.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 5.8e-165 585.1 555 54.4
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 2.2e-164 583.2 493 58.2
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 3.8e-164 582.4 552 54.5
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 6.4e-164 581.6 532 55.8
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 6.4e-164 581.6 543 55.8
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 8.4e-164 581.3 492 59.6
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 8.4e-164 581.3 551 54.6
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.1e-163 580.9 471 60.1
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.4e-163 579.7 542 54.6
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 3.2e-163 579.3 568 53.2
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 3.2e-163 579.3 551 55.0
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 2.7e-162 576.2 475 60.6
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.7e-162 576.2 551 53.7
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 3.5e-162 575.9 500 57.8
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 1.3e-161 573.9 523 56.4
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 1.1e-160 570.9 487 58.7
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 3.3e-160 569.3 480 57.9
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 7.3e-160 568.2 480 57.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 7.3e-160 568.2 487 58.5
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.3e-159 567.4 479 58.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 1.6e-159 567.0 455 59.6
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.6e-159 567.0 477 57.7
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 6.2e-159 565.1 559 52.2
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.1e-158 564.3 477 57.2
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.4e-158 563.9 622 49.7
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 5.3e-158 562.0 479 58.2
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 5.3e-158 562.0 516 54.5
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.2e-157 560.8 557 52.1
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 4.9e-156 555.4 493 55.8
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 4.9e-156 555.4 473 58.8
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 5.4e-155 552.0 488 56.1
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.1e-154 550.1 502 54.8
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 6.0e-154 548.5 465 58.9
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-153 547.4 570 50.7
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 3.9e-153 545.8 505 54.5
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 9.6e-152 541.2 474 56.8
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.8e-151 539.7 444 58.8
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 4.8e-151 538.9 480 55.4
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.8e-150 537.0 480 55.4
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 7.6e-149 531.6 480 55.0
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 4.9e-148 528.9 532 52.1
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.4e-147 527.3 563 51.0
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.3e-145 520.8 432 60.6
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 6.7e-145 518.5 504 52.4
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 3.2e-131 473.0 557 47.4
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-130 470.3 365 64.1
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 3.6e-130 469.5 390 57.9
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 6.1e-130 468.8 451 55.0
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 8.7e-129 464.9 362 59.9
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 9.7e-128 461.5 437 54.9
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 4.8e-127 459.1 541 47.3
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 4.1e-126 456.1 396 57.8
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 5.0e-124 449.1 348 60.9
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.5e-124 448.7 477 51.4
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.1e-122 443.7 381 54.9
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 7.9e-122 441.8 438 49.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.5e-120 437.6 348 58.9
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 7.4e-120 435.3 502 47.0
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 9.4e-115 418.3 502 44.0
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.2e-109 401.4 342 56.7
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.3e-108 397.9 514 42.6
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.5e-107 394.4 319 59.2
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 2.7e-106 390.2 319 59.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.8e-105 387.5 323 57.3
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 2.3e-105 387.1 473 46.3
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.5e-104 384.4 401 52.1
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.5e-99 367.1 489 43.8
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.2e-99 365.5 350 51.7
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 2.4e-94 350.5 372 52.7
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 5.4e-94 349.4 296 56.8
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.0e-92 345.1 298 55.7
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.0e-88 330.9 326 54.9
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.9e-84 317.0 254 59.1
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 6.1e-82 309.3 479 35.9
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.4e-78 296.2 250 59.6
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 4.6e-77 293.1 242 60.3
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.7e-76 291.2 212 65.1
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.2e-71 274.2 214 60.3
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 8.3e-63 245.7 177 66.7
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.2e-58 229.6 158 68.4
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.8e-55 220.3 146 69.2
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.6e-50 203.8 161 60.2
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.9e-47 194.1 157 61.1
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.5e-45 187.2 134 66.4
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 4.6e-37 160.2 187 42.2
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.6e-29 135.2 144 55.6
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.7e-29 134.4 205 40.5
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.8e-28 131.7 120 55.8
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 5.3e-25 120.2 90 70.0
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 6.9e-25 119.8 90 73.3
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 5.8e-24 116.7 144 49.3
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.3e-23 115.5 177 45.8
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 6.5e-23 113.2 149 39.6
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 3.2e-22 110.9 75 69.3
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.5e-19 102.1 86 61.6
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 1.9e-11 75.1 63 63.5
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 7.7e-08 63.2 69 44.9
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 5.0e-07 60.5 68 47.1


User provided reference genes

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