Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0506800 Oryza sativa ssp. japonica HOM05D018687 ORTHO05D001487 3.5e-229 798.1 456 100.0
Zm00001eb170080 Zea mays HOM05D018687 ORTHO05D001487 3.2e-57 226.9 459 45.1
Zm00001eb342150 Zea mays HOM05D018687 ORTHO05D001487 1.4e-39 168.3 396 42.4
Zm00001eb113100 Zea mays HOM05D018687 ORTHO05D001487 9.1e-28 129.0 435 34.3
Zm00001eb113110 Zea mays HOM05D018687 ORTHO05D001487 7.7e-27 125.9 273 41.8
Zm00001eb424260 Zea mays HOM05D018687 ORTHO05D001487 3.2e-25 120.6 429 35.7
Zm00001eb030080 Zea mays HOM05D018687 ORTHO05D001487 9.4e-25 119.0 308 38.3
HPP92_006390 Vanilla planifolia HOM05D002685 ORTHO05D001487 4.2e-09 67.0 240 33.8
Zm00001eb252920 Zea mays HOM05D002685 ORTHO05D001487 5.5e-09 66.6 138 42.0
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 9.5e-09 65.9 145 31.0
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 1.6e-08 65.1 154 32.5
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.1e-08 64.7 201 28.9
Zm00001eb189410 Zea mays HOM05D002685 ORTHO05D001487 2.1e-08 64.7 103 45.6
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 4.7e-08 63.5 164 32.3
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 4.7e-08 63.5 145 31.7
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 4.7e-08 63.5 154 36.4
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 6.1e-08 63.2 179 31.3
Os02g0719700 Oryza sativa ssp. japonica HOM05D002685 ORTHO05D001487 6.1e-08 63.2 142 40.1
Hma1.2p1_0700F.1_g205790 Hydrangea macrophylla HOM05D002685 ORTHO05D001487 8.0e-08 62.8 97 42.3
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 8.0e-08 62.8 132 35.6
CDE05G2679 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 1.0e-07 62.4 143 30.8
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.0e-07 62.4 201 28.4
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.4e-07 62.0 141 31.9
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 1.4e-07 62.0 141 31.9
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 1.4e-07 62.0 131 36.6
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 1.8e-07 61.6 97 41.2
MBI16_g41625_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 3.0e-07 60.8 117 38.5
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 4.0e-07 60.5 212 29.7
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.0e-07 60.5 140 32.9
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 4.0e-07 60.5 187 28.3
Gorai.001G075700 Gossypium raimondii HOM05D002685 ORTHO05D001487 4.0e-07 60.5 199 28.6
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 5.2e-07 60.1 183 28.4
Nitab4.5_0001109g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 5.2e-07 60.1 96 40.6
Nitab4.5_0003785g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 5.2e-07 60.1 96 40.6
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 8.9e-07 59.3 215 28.4
RcHm_v2.0_Chr5g0001561 Rosa chinensis HOM05D002685 ORTHO05D001487 8.9e-07 59.3 97 41.2
FvH4_3g01021 Fragaria vesca HOM05D002685 ORTHO05D001487 1.2e-06 58.9 104 37.5
Prupe.4G011000 Prunus persica HOM05D002685 ORTHO05D001487 1.2e-06 58.9 101 37.6
Rhsim13G0146100 Rhododendron simsii HOM05D002685 ORTHO05D001487 1.2e-06 58.9 97 43.3
RhsimUnG0109500 Rhododendron simsii HOM05D002685 ORTHO05D001487 1.2e-06 58.9 97 43.3
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.5e-06 58.5 200 31.5
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 2.0e-06 58.2 195 30.8
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 2.0e-06 58.2 156 31.4
HPP92_022804 Vanilla planifolia HOM05D002685 ORTHO05D001487 2.0e-06 58.2 102 41.2
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 2.6e-06 57.8 130 33.8
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 2.6e-06 57.8 399 27.3
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 2.6e-06 57.8 159 30.8
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 3.4e-06 57.4 136 32.4
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 3.4e-06 57.4 143 32.9
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 3.4e-06 57.4 256 26.6
Lsat_1_v5_gn_4_62441 Lactuca sativa HOM05D002685 ORTHO05D001487 3.4e-06 57.4 99 35.4
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 3.4e-06 57.4 171 29.8
Oeu058906.1 Olea europaea HOM05D002685 ORTHO05D001487 3.4e-06 57.4 113 36.3
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 3.4e-06 57.4 143 33.6
SGA_v2.0_scaffold68G22835 Striga asiatica HOM05D002685 ORTHO05D001487 3.4e-06 57.4 155 28.4
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 3.4e-06 57.4 132 33.3
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 4.4e-06 57.0 96 37.5
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 4.4e-06 57.0 146 32.9
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 4.4e-06 57.0 146 32.9
FAN17G2673 Fragaria x ananassa HOM05D002685 ORTHO05D001487 4.4e-06 57.0 159 30.8
Manes.10G111700 Manihot esculenta HOM05D002685 ORTHO05D001487 4.4e-06 57.0 122 34.4
Sopen04g006850 Solanum pennellii HOM05D002685 ORTHO05D001487 4.4e-06 57.0 103 39.8
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 4.4e-06 57.0 103 39.8
MSTRG.15538 Avicennia marina HOM05D002685 ORTHO05D001487 5.7e-06 56.6 132 28.8
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 5.7e-06 56.6 96 38.5
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 7.5e-06 56.2 153 30.7
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 7.5e-06 56.2 145 31.7
unitig_32.g11048 Utricularia gibba HOM05D002685 ORTHO05D001487 7.5e-06 56.2 102 42.2
Actinidia26861 Actinidia chinensis HOM05D002685 ORTHO05D001487 9.8e-06 55.8 115 40.0
Cc09_g00900 Coffea canephora HOM05D002685 ORTHO05D001487 9.8e-06 55.8 97 39.2
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 9.8e-06 55.8 131 31.3
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 9.8e-06 55.8 96 35.4
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 9.8e-06 55.8 190 28.4
TAR624G0212 Trochodendron aralioides HOM05D002685 ORTHO05D001487 9.8e-06 55.8 134 31.3


User provided reference genes

Program Settings