Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0503400 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D297714 1.5e-141 506.1 255 100.0
Zm00001eb029400 Zea mays HOM05D002181 ORTHO05D030349 3.0e-20 103.2 203 36.5
Os12g0285100 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D030349 1.1e-17 94.7 157 42.0
Os12g0549800 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D030349 6.9e-17 92.0 161 40.4
Os12g0551200 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D299566 1.1e-14 84.7 224 31.2
Os12g0548800 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D295980 6.0e-13 79.0 153 35.3
Os12g0261300 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D293488 1.3e-12 77.8 170 35.9
MBI19_g26729_MAGBIO Magnolia biondii HOM05D002181 ORTHO05D003287 1.8e-12 77.4 148 35.1
Os05g0239400 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D295935 2.3e-12 77.0 165 37.0
PSO210G0199 Papaver somniferum HOM05D002181 ORTHO05D003287 1.1e-11 74.7 151 34.4
PSO832G4062 Papaver somniferum HOM05D002181 ORTHO05D003287 1.5e-11 74.3 143 37.1
Potri.008G200500 Populus trichocarpa HOM05D002181 ORTHO05D003287 5.7e-11 72.4 144 34.0
Lsat_1_v5_gn_8_109980 Lactuca sativa HOM05D002181 ORTHO05D003287 7.4e-11 72.0 152 32.9
Zm00001eb032620 Zea mays HOM05D002181 ORTHO05D446147 9.6e-11 71.6 158 31.6
Nn4g26158 Nelumbo nucifera HOM05D002181 ORTHO05D003287 1.3e-10 71.2 150 34.7
Sabra10G0011800 Salix brachista HOM05D002181 ORTHO05D003287 1.3e-10 71.2 145 33.1
HPP92_001022 Vanilla planifolia HOM05D002181 ORTHO05D003287 1.3e-10 71.2 136 34.6
ECA236G3749 Erigeron canadensis HOM05D002181 ORTHO05D003287 1.6e-10 70.9 152 33.6
CDE11G1151 Ceratophyllum demersum HOM05D002181 ORTHO05D003287 2.1e-10 70.5 147 34.7
Nn1g02135 Nelumbo nucifera HOM05D002181 ORTHO05D003287 2.1e-10 70.5 146 34.2
Oeu037673.1 Olea europaea HOM05D002181 ORTHO05D003287 2.8e-10 70.1 144 34.0
Os07g0650200 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D013341 2.8e-10 70.1 127 30.7
EL10Ac3g06316 Beta vulgaris HOM05D002181 ORTHO05D003287 3.7e-10 69.7 143 31.5
Eucgr.B01159 Eucalyptus grandis HOM05D002181 ORTHO05D003287 3.7e-10 69.7 149 32.2
Lsat_1_v5_gn_7_62401 Lactuca sativa HOM05D002181 ORTHO05D003287 8.2e-10 68.6 144 34.7
Oeu023655.1 Olea europaea HOM05D002181 ORTHO05D003287 1.1e-09 68.2 136 33.1
Potri.010G029300 Populus trichocarpa HOM05D002181 ORTHO05D003287 1.1e-09 68.2 145 32.4
Sabra08G0160700 Salix brachista HOM05D002181 ORTHO05D003287 1.1e-09 68.2 144 31.9
unitig_736.g22497 Utricularia gibba HOM05D002181 ORTHO05D003287 1.1e-09 68.2 165 32.1
GSVIVG01017870001 Vitis vinifera HOM05D002181 ORTHO05D003287 1.1e-09 68.2 149 30.9
SGA_v2.0_scaffold142G35621 Striga asiatica HOM05D002181 ORTHO05D003287 1.8e-09 67.4 144 31.9
COL.COLO4_21625 Corchorus olitorius HOM05D002181 ORTHO05D003287 2.4e-09 67.0 152 30.3
PGR031G1046 Punica granatum HOM05D002181 ORTHO05D003287 3.1e-09 66.6 149 28.9
HanXRQChr16g0510721 Helianthus annuus HOM05D002181 ORTHO05D003287 6.9e-09 65.5 149 32.9
Ciclev10004326m.g Citrus clementina HOM05D002181 ORTHO05D003287 9.0e-09 65.1 149 32.2
TAR362G0170 Trochodendron aralioides HOM05D002181 ORTHO05D003287 9.0e-09 65.1 147 33.3
TAR362G0409 Trochodendron aralioides HOM05D002181 ORTHO05D003287 9.0e-09 65.1 147 33.3
HPP92_011327 Vanilla planifolia HOM05D002181 ORTHO05D003287 9.0e-09 65.1 149 32.2
ATR0626G280 Amborella trichopoda HOM05D002181 ORTHO05D003287 1.2e-08 64.7 143 33.6
Ca_00611_v3 Cicer arietinum L. HOM05D002181 ORTHO05D003287 1.2e-08 64.7 153 30.1
Psat1g184800 Pisum sativum HOM05D002181 ORTHO05D003287 1.2e-08 64.7 153 30.1
Sp7g12290 Schrenkiella parvula HOM05D002181 ORTHO05D003287 1.2e-08 64.7 157 32.5
Lalb_Chr20g0118341 Lupinus albus HOM05D002181 ORTHO05D003287 1.5e-08 64.3 153 30.1
vmacro15295 Vaccinium macrocarpon HOM05D002181 ORTHO05D003287 1.5e-08 64.3 149 29.5
Lalb_Chr13g0304041 Lupinus albus HOM05D002181 ORTHO05D003287 2.0e-08 63.9 153 29.4
RcHm_v2.0_Chr4g0418981 Rosa chinensis HOM05D002181 ORTHO05D003287 2.0e-08 63.9 148 29.7
Aqoxy5G00542 Aquilegia oxysepala HOM05D002181 ORTHO05D003287 2.6e-08 63.5 144 34.0
Duzib151G0934 Durio zibethinus HOM05D002181 ORTHO05D003287 2.6e-08 63.5 144 31.2
Glyma.07G255300 Glycine max HOM05D002181 ORTHO05D003287 2.6e-08 63.5 148 30.4
Ah.13g074340 Amaranthus hybridus HOM05D002181 ORTHO05D003287 3.4e-08 63.2 132 31.8
Duzib212G0330 Durio zibethinus HOM05D002181 ORTHO05D003287 4.5e-08 62.8 147 30.6
Lalb_Chr18g0055991 Lupinus albus HOM05D002181 ORTHO05D003287 4.5e-08 62.8 149 30.2
Medtr2g021310 Medicago truncatula HOM05D002181 ORTHO05D003287 4.5e-08 62.8 153 30.1
vmacro15296 Vaccinium macrocarpon HOM05D002181 ORTHO05D003287 4.5e-08 62.8 137 29.9
Carub.0006s1728 Capsella rubella HOM05D002181 ORTHO05D003287 5.8e-08 62.4 144 30.6
Cc03_g02970 Coffea canephora HOM05D002181 ORTHO05D003287 5.8e-08 62.4 149 30.2
Eucgr.H03615 Eucalyptus grandis HOM05D002181 ORTHO05D003287 5.8e-08 62.4 144 30.6
TPR.G11033 Trifolium pratense HOM05D002181 ORTHO05D003287 5.8e-08 62.4 153 29.4
Ah.07g204080 Amaranthus hybridus HOM05D002181 ORTHO05D003287 7.6e-08 62.0 137 32.1
BcaC04g18634 Brassica carinata HOM05D002181 ORTHO05D003287 7.6e-08 62.0 149 30.2
C09p57520 Brassica napus HOM05D002181 ORTHO05D003287 7.6e-08 62.0 149 30.2
Cpa.g.sc16.47 Carica papaya HOM05D002181 ORTHO05D003287 7.6e-08 62.0 152 29.6
CANSAT78G2479 Cannabis sativa HOM05D002181 ORTHO05D003287 1.0e-07 61.6 148 29.7
Migut.G00255 Erythranthe guttata HOM05D002181 ORTHO05D003287 1.0e-07 61.6 144 31.9
Phvul.003G096100 Phaseolus vulgaris HOM05D002181 ORTHO05D003287 1.0e-07 61.6 148 29.7
Rhsim02G0018500 Rhododendron simsii HOM05D002181 ORTHO05D003287 1.0e-07 61.6 149 30.9
arahy.Tifrunner.gnm1.ann1.50I9RC Arachis hypogaea HOM05D002181 ORTHO05D003287 1.3e-07 61.2 144 29.9
arahy.Tifrunner.gnm1.ann1.7NQ1D2 Arachis hypogaea HOM05D002181 ORTHO05D003287 1.3e-07 61.2 144 29.9
Glyma.15G102300 Glycine max HOM05D002181 ORTHO05D003287 1.3e-07 61.2 153 28.8
Thecc.04G219400 Theobroma cacao HOM05D002181 ORTHO05D003287 1.3e-07 61.2 144 30.6
BcaB08g36630 Brassica carinata HOM05D002181 ORTHO05D003287 1.7e-07 60.8 149 29.5
A10p20700 Brassica napus HOM05D002181 ORTHO05D003287 1.7e-07 60.8 149 29.5
BolC9t58619H Brassica oleracea HOM05D002181 ORTHO05D003287 1.7e-07 60.8 149 29.5
BraA10t44133Z Brassica rapa HOM05D002181 ORTHO05D003287 1.7e-07 60.8 149 29.5
CiPaw.02G090600 Carya illinoinensis HOM05D002181 ORTHO05D003287 1.7e-07 60.8 146 30.1
Dinv38368 Davidia involucrata HOM05D002181 ORTHO05D003287 1.7e-07 60.8 152 28.9
Rhsim02G0018700 Rhododendron simsii HOM05D002181 ORTHO05D003287 1.7e-07 60.8 152 30.3
Sc19g0004640 Simmondsia chinensis HOM05D002181 ORTHO05D003287 1.7e-07 60.8 143 30.8
TWI73G0131 Tripterygium wilfordii HOM05D002181 ORTHO05D003287 1.7e-07 60.8 141 31.2
Glyma.17G019000 Glycine max HOM05D002181 ORTHO05D003287 2.2e-07 60.5 148 29.7
RcHm_v2.0_Chr4g0418921 Rosa chinensis HOM05D002181 ORTHO05D003287 2.2e-07 60.5 148 29.7
Zm00001eb017660 Zea mays HOM05D002181 ORTHO05D003287 2.2e-07 60.5 136 27.9
Zm00001eb059680 Zea mays HOM05D002181 ORTHO05D003287 2.2e-07 60.5 136 27.9
DCAR_027143 Daucus carota HOM05D002181 ORTHO05D003287 2.9e-07 60.1 147 31.3
Os07g0648400 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D295191 2.9e-07 60.1 168 32.1
Os07g0649300 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D013341 2.9e-07 60.1 125 32.8
SEGI_37943 Sequoiadendron giganteum HOM05D002181 ORTHO05D003287 2.9e-07 60.1 145 30.3
VMungo0540G1789 Vigna mungo HOM05D002181 ORTHO05D003287 2.9e-07 60.1 153 28.1
Actinidia00080 Actinidia chinensis HOM05D002181 ORTHO05D003287 3.8e-07 59.7 149 30.9
AT5G18980 Arabidopsis thaliana HOM05D002181 ORTHO05D003287 3.8e-07 59.7 144 29.9
Cfa015561 Carpinus fangiana HOM05D002181 ORTHO05D003287 3.8e-07 59.7 165 27.9
Os07g0649500 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D013341 3.8e-07 59.7 139 30.2
Peaxi162Scf00095g00088 Petunia axillaris HOM05D002181 ORTHO05D003287 3.8e-07 59.7 144 29.9
Sp6g25410 Schrenkiella parvula HOM05D002181 ORTHO05D003287 3.8e-07 59.7 144 29.9
VMungo1215G1039 Vigna mungo HOM05D002181 ORTHO05D003287 3.8e-07 59.7 148 29.1
A05p16680 Brassica napus HOM05D002181 ORTHO05D003287 5.0e-07 59.3 157 31.8
BraA05t20572Z Brassica rapa HOM05D002181 ORTHO05D003287 5.0e-07 59.3 157 31.8
Carub.0007s2803 Capsella rubella HOM05D002181 ORTHO05D003287 5.0e-07 59.3 144 29.2
AUR62002623 Chenopodium quinoa HOM05D002181 ORTHO05D003287 5.0e-07 59.3 132 30.3
Manes.15G021700 Manihot esculenta HOM05D002181 ORTHO05D003287 5.0e-07 59.3 152 27.6
SalBow2G1768 Salvia bowleyana HOM05D002181 ORTHO05D003287 5.0e-07 59.3 144 30.6
TPR.G20122 Trifolium pratense HOM05D002181 ORTHO05D003287 5.0e-07 59.3 148 29.1
CiPaw.01G158200 Carya illinoinensis HOM05D002181 ORTHO05D003287 6.5e-07 58.9 148 27.7
Eucgr.H03618 Eucalyptus grandis HOM05D002181 ORTHO05D003287 6.5e-07 58.9 152 29.6
Thhalv10012681m.g Eutrema salsugineum HOM05D002181 ORTHO05D003287 6.5e-07 58.9 144 29.2
FvH4_4g14210 Fragaria vesca HOM05D002181 ORTHO05D003287 6.5e-07 58.9 148 29.7
FAN12G0231 Fragaria x ananassa HOM05D002181 ORTHO05D003287 6.5e-07 58.9 148 29.7
Glyma.13G210500 Glycine max HOM05D002181 ORTHO05D003287 6.5e-07 58.9 153 28.1
Phvul.006G155500 Phaseolus vulgaris HOM05D002181 ORTHO05D003287 6.5e-07 58.9 153 28.1
Prupe.1G148900 Prunus persica HOM05D002181 ORTHO05D003287 6.5e-07 58.9 185 29.7
SEGI_24489 Sequoiadendron giganteum HOM05D002181 ORTHO05D003287 6.5e-07 58.9 255 27.1
AL6G30330 Arabidopsis lyrata HOM05D002181 ORTHO05D003287 8.4e-07 58.5 144 29.2
BolC6t36900H Brassica oleracea HOM05D002181 ORTHO05D003287 8.4e-07 58.5 144 31.9
Eucgr.H03628 Eucalyptus grandis HOM05D002181 ORTHO05D003287 8.4e-07 58.5 152 29.6
Hma1.2p1_3925F.1_g337970 Hydrangea macrophylla HOM05D002181 ORTHO05D003287 8.4e-07 58.5 144 29.9
QL06p005869 Quercus lobata HOM05D002181 ORTHO05D003287 8.4e-07 58.5 140 29.3
Rhsim02G0018300 Rhododendron simsii HOM05D002181 ORTHO05D003287 8.4e-07 58.5 152 29.6
Aa31LG11G10750 Aethionema arabicum HOM05D002181 ORTHO05D003287 1.1e-06 58.2 149 28.9
Lj6g0002777 Lotus japonicus HOM05D002181 ORTHO05D003287 1.1e-06 58.2 149 28.9
AL7G42020 Arabidopsis lyrata HOM05D002181 ORTHO05D003287 1.4e-06 57.8 143 30.8
AT3G06210 Arabidopsis thaliana HOM05D002181 ORTHO05D003287 1.4e-06 57.8 149 29.5
CAN.G522.5 Capsicum annuum HOM05D002181 ORTHO05D003287 1.4e-06 57.8 144 30.6
AUR62030039 Chenopodium quinoa HOM05D002181 ORTHO05D003287 1.4e-06 57.8 132 29.5
Ca_21578_v3 Cicer arietinum L. HOM05D002181 ORTHO05D003287 1.4e-06 57.8 147 29.3
Cc03_g11960 Coffea canephora HOM05D002181 ORTHO05D003287 1.4e-06 57.8 169 29.0
Thhalv10027455m.g Eutrema salsugineum HOM05D002181 ORTHO05D003287 1.4e-06 57.8 157 31.2
FAN07G2724 Fragaria x ananassa HOM05D002181 ORTHO05D003287 1.4e-06 57.8 148 29.1
MD13G1180800 Malus domestica HOM05D002181 ORTHO05D003287 1.4e-06 57.8 198 27.3
RcHm_v2.0_Chr4g0418961 Rosa chinensis HOM05D002181 ORTHO05D003287 1.4e-06 57.8 148 29.1
ClCG05G005510 Citrullus lanatus HOM05D002181 ORTHO05D003287 1.9e-06 57.4 152 28.3
FAN17G1060 Fragaria x ananassa HOM05D002181 ORTHO05D003287 1.9e-06 57.4 148 29.1
FAN22G0299 Fragaria x ananassa HOM05D002181 ORTHO05D003287 1.9e-06 57.4 148 29.1
Nitab4.5_0006569g0010 Nicotiana tabacum HOM05D002181 ORTHO05D003287 1.9e-06 57.4 144 29.9
SEGI_16830 Sequoiadendron giganteum HOM05D002181 ORTHO05D003287 1.9e-06 57.4 146 30.8
Solyc01g080260.3 Solanum lycopersicum HOM05D002181 ORTHO05D003287 1.9e-06 57.4 144 29.2
Sopen01g032050 Solanum pennellii HOM05D002181 ORTHO05D003287 1.9e-06 57.4 144 29.2
PGSC0003DMG400004356 Solanum tuberosum HOM05D002181 ORTHO05D003287 1.9e-06 57.4 144 29.2
BcaB07g33057 Brassica carinata HOM05D002181 ORTHO05D003287 2.5e-06 57.0 156 29.5
CARHR194020 Cardamine hirsuta HOM05D002181 ORTHO05D003287 2.5e-06 57.0 172 30.2
Lj6A664T60 Lonicera japonica HOM05D002181 ORTHO05D003287 2.5e-06 57.0 147 29.3
Os07g0648900 Oryza sativa ssp. japonica HOM05D002181 ORTHO05D013341 2.5e-06 57.0 136 28.7
Rhsim04G0209500 Rhododendron simsii HOM05D002181 ORTHO05D003287 2.5e-06 57.0 153 29.4
THA.LOC104808657 Tarenaya hassleriana HOM05D002181 ORTHO05D003287 2.5e-06 57.0 141 28.4
BcaC05g29794 Brassica carinata HOM05D002181 ORTHO05D003287 3.2e-06 56.6 149 29.5
BcaC08g44283 Brassica carinata HOM05D002181 ORTHO05D003287 3.2e-06 56.6 130 33.1
C05p61060 Brassica napus HOM05D002181 ORTHO05D003287 3.2e-06 56.6 149 29.5
C06p17010 Brassica napus HOM05D002181 ORTHO05D003287 3.2e-06 56.6 130 33.1
BolC5t34763H Brassica oleracea HOM05D002181 ORTHO05D003287 3.2e-06 56.6 149 29.5
Zm00001eb017670 Zea mays HOM05D002181 ORTHO05D003287 3.2e-06 56.6 140 28.6
Carub.0003s0565 Capsella rubella HOM05D002181 ORTHO05D003287 4.2e-06 56.2 149 28.9
CARHR220440 Cardamine hirsuta HOM05D002181 ORTHO05D003287 4.2e-06 56.2 147 30.6
MELO3C006576.2 Cucumis melo HOM05D002181 ORTHO05D003287 4.2e-06 56.2 152 28.3
Eucgr.H03630 Eucalyptus grandis HOM05D002181 ORTHO05D003287 4.2e-06 56.2 152 28.9
CsaV3_3G013830 Cucumis sativus L. HOM05D002181 ORTHO05D003287 5.5e-06 55.8 152 28.9
Eucgr.H03616 Eucalyptus grandis HOM05D002181 ORTHO05D003287 5.5e-06 55.8 152 29.6
Nitab4.5_0000732g0170 Nicotiana tabacum HOM05D002181 ORTHO05D003287 5.5e-06 55.8 141 29.8
SHI00358 Sapria himalayana HOM05D002181 ORTHO05D003287 5.5e-06 55.8 148 29.1
THA.LOC104822317 Tarenaya hassleriana HOM05D002181 ORTHO05D003287 7.2e-06 55.5 141 29.1
AT4G14280 Arabidopsis thaliana HOM05D002181 ORTHO05D003287 9.3e-06 55.1 143 30.1


User provided reference genes

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