Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0502700 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 8.9e-60 233.4 119 100.0
Zm00001eb170050 Zea mays HOM05D018994 ORTHO05D001647 7.6e-35 150.6 102 74.5
Os12g0465000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 5.1e-23 111.3 102 52.0
Zm00001eb266630 Zea mays HOM05D018994 ORTHO05D001647 2.5e-22 109.0 79 70.9
Os12g0465100 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 3.4e-19 98.6 101 46.5
Os11g0479000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.9e-17 92.8 113 46.0
Zm00001eb112970 Zea mays HOM05D018994 ORTHO05D001647 3.0e-15 85.5 97 46.4
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 8.5e-10 67.4 102 37.3
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.1e-09 67.0 103 30.1
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 7.2e-09 64.3 105 32.4
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.6e-08 63.2 88 35.2
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.1e-08 62.8 88 35.2
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 3.6e-08 62.0 103 29.1
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.0e-07 60.5 93 33.3
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.0e-07 60.5 102 28.4
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-07 60.5 104 27.9
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-07 60.5 104 27.9
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-07 60.5 104 27.9
Zm00001eb170490 Zea mays HOM05D001817 ORTHO05D001647 1.0e-07 60.5 106 37.7
Zm00001eb170500 Zea mays HOM05D001817 ORTHO05D001647 1.0e-07 60.5 106 37.7
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 2.3e-07 59.3 98 30.6
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 5.1e-07 58.2 94 37.2
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 1.1e-06 57.0 108 32.4
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 1.1e-06 57.0 102 31.4
Haze_21485 Corylus avellana HOM05D001817 ORTHO05D001647 2.0e-06 56.2 85 34.1
Dinv24980 Davidia involucrata HOM05D001817 ORTHO05D001647 2.6e-06 55.8 87 32.2
Medtr6g445140 Medicago truncatula HOM05D001817 ORTHO05D001647 2.6e-06 55.8 89 33.7
Zm00001eb307030 Zea mays HOM05D001817 ORTHO05D001647 2.6e-06 55.8 105 35.2
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 3.3e-06 55.5 117 28.2
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 3.3e-06 55.5 103 28.2
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 3.3e-06 55.5 88 37.5
A08p36270 Brassica napus HOM05D009409 ORTHO05D010962 5.7e-06 54.7 105 34.3
BraA08t35531Z Brassica rapa HOM05D009409 ORTHO05D010962 5.7e-06 54.7 105 34.3
CANSAT25G3871 Cannabis sativa HOM05D001817 ORTHO05D001647 7.4e-06 54.3 94 33.0
C08p02250 Brassica napus HOM05D009409 ORTHO05D010962 9.7e-06 53.9 105 34.3


User provided reference genes

Program Settings