Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 6.5e-171 604.0 307 100.0
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 5.4e-117 424.9 301 74.8
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 4.0e-80 302.4 267 58.1
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 1.2e-79 300.8 275 57.5
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.5e-79 298.9 298 54.4
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 1.3e-78 297.4 271 57.6
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 2.2e-78 296.6 273 56.4
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.9e-78 296.2 267 59.2
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 2.9e-78 296.2 267 58.8
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 4.9e-78 295.4 275 56.0
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 6.5e-78 295.0 275 55.6
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 8.4e-78 294.7 275 57.1
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 1.4e-77 293.9 281 54.4
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 1.9e-77 293.5 276 54.7
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.9e-77 293.5 281 55.5
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 2.5e-77 293.1 282 55.0
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 7.1e-77 291.6 267 57.7
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 9.3e-77 291.2 284 55.3
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.1e-76 290.0 279 53.8
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 3.5e-76 289.3 271 57.2
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 6.0e-76 288.5 281 54.4
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 7.9e-76 288.1 274 55.8
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 7.9e-76 288.1 271 55.7
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 7.9e-76 288.1 275 54.5
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 1.3e-75 287.3 280 55.4
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.3e-75 287.3 267 56.2
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.8e-75 287.0 268 56.0
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 3.0e-75 286.2 278 54.3
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 3.0e-75 286.2 272 57.0
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 6.7e-75 285.0 271 55.4
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 8.7e-75 284.6 275 54.2
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.1e-74 284.3 276 54.0
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 3.3e-74 282.7 271 55.0
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 5.7e-74 282.0 271 55.0
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 9.6e-74 281.2 275 54.5
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 2.1e-73 280.0 277 53.8
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 3.7e-73 279.3 271 55.7
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 3.7e-73 279.3 284 51.8
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 6.3e-73 278.5 276 54.3
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 8.2e-73 278.1 275 54.5
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 8.2e-73 278.1 296 51.4
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 1.1e-72 277.7 280 53.9
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 1.4e-72 277.3 284 54.2
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.8e-72 276.9 292 52.7
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.8e-72 276.9 271 54.2
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.4e-72 276.6 277 56.0
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 2.4e-72 276.6 267 55.4
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 2.4e-72 276.6 273 53.5
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.1e-72 276.2 284 53.2
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 4.1e-72 275.8 297 52.5
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 5.3e-72 275.4 279 53.4
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 5.3e-72 275.4 279 53.0
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 5.3e-72 275.4 270 53.7
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.2e-71 274.2 271 55.7
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 4.5e-71 272.3 295 52.2
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 5.9e-71 271.9 270 53.0
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 5.9e-71 271.9 299 50.5
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 5.9e-71 271.9 299 50.5
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.0e-70 271.2 283 52.3
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.0e-70 271.2 291 51.9
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.0e-70 271.2 291 51.9
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.3e-70 270.8 281 51.6
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.3e-70 270.8 279 52.7
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 1.3e-70 270.8 270 53.7
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.7e-70 270.4 277 51.6
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 2.2e-70 270.0 283 51.6
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 2.9e-70 269.6 291 50.9
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 2.9e-70 269.6 270 52.6
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 3.8e-70 269.2 288 50.7
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 5.0e-70 268.9 281 53.4
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 5.0e-70 268.9 282 53.9
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 6.5e-70 268.5 282 53.9
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 8.5e-70 268.1 282 53.9
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.1e-69 267.7 321 49.2
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 3.2e-69 266.2 268 54.5
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 5.5e-69 265.4 277 52.7
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 7.2e-69 265.0 274 52.6
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 2.1e-68 263.5 281 50.9
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 2.1e-68 263.5 288 49.0
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.1e-68 263.5 269 52.4
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 2.1e-68 263.5 327 46.8
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 4.6e-68 262.3 274 52.6
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 6.1e-68 261.9 286 50.3
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.3e-67 260.8 281 49.5
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.3e-67 260.8 271 53.5
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.3e-67 260.8 272 52.2
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 3.0e-67 259.6 271 53.1
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 1.5e-66 257.3 262 52.3
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.9e-66 256.9 275 49.5
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 4.8e-65 252.3 275 50.9
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 5.3e-64 248.8 276 51.1
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 4.5e-63 245.7 300 46.7
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 1.7e-62 243.8 182 63.7
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 2.5e-61 240.0 285 46.0
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 4.5e-55 219.2 219 53.0
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 2.2e-54 216.9 216 55.1
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 7.2e-53 211.8 268 45.1
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 6.1e-52 208.8 284 46.5
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.0e-51 208.0 277 43.7
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.5e-50 204.1 279 43.7
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 2.6e-50 203.4 260 47.3
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 2.8e-41 173.3 120 66.7
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 5.3e-40 169.1 120 65.0
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 2.2e-38 163.7 171 47.4
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 2.0e-31 140.6 121 57.9
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.1e-29 134.8 281 36.7
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 3.2e-29 133.3 289 34.3
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 4.9e-25 119.4 271 32.5
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 5.0e-22 109.4 162 40.7
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.9e-21 107.5 159 44.7
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 1.0e-19 101.7 180 35.0
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 1.6e-15 87.8 151 36.4
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 8.0e-12 75.5 151 35.8
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.0e-10 70.9 148 39.2
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.1e-08 65.1 38 78.9


User provided reference genes

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