Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.5e-93 346.3 316 100.0
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.3e-36 157.9 338 49.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.8e-35 154.1 335 39.7
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-18 98.2 329 38.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.0e-17 95.1 338 39.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.5e-16 91.3 363 30.9
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 9.4e-16 88.6 332 31.6
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 2.7e-15 87.0 184 35.9
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.7e-15 86.3 192 33.9
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.1e-15 85.9 352 34.7
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.0e-14 85.1 330 29.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.0e-14 85.1 294 36.1
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.0e-14 85.1 290 47.6
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.4e-14 84.7 162 38.3
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.8e-14 84.3 334 34.4
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.8e-14 84.3 323 31.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.3e-14 84.0 325 34.8
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 2.3e-14 84.0 330 37.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 3.0e-14 83.6 293 30.4
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.0e-14 83.6 349 34.1
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 5.2e-14 82.8 190 35.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 8.8e-14 82.0 294 39.5
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 8.8e-14 82.0 348 38.5
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-13 81.6 366 33.1
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.5e-13 81.3 334 33.8
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.5e-13 81.3 323 34.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-13 80.9 194 34.5
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.0e-13 80.9 333 35.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-13 80.9 333 35.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.0e-13 80.9 333 35.4
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.6e-13 80.5 326 30.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.4e-13 80.1 182 35.2
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 3.4e-13 80.1 333 33.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.4e-13 80.1 302 33.1
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 3.4e-13 80.1 332 32.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 4.4e-13 79.7 187 36.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 9.8e-13 78.6 191 33.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 9.8e-13 78.6 348 33.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 9.8e-13 78.6 359 33.7
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.3e-12 78.2 228 33.3
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.3e-12 78.2 347 28.0
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.3e-12 78.2 183 35.0
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-12 78.2 348 32.5
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.7e-12 77.8 340 35.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.2e-12 77.4 166 38.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.8e-12 77.0 183 35.5
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.7e-12 76.6 332 34.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 6.3e-12 75.9 185 37.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 6.3e-12 75.9 214 31.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 8.3e-12 75.5 337 33.2
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-11 75.1 192 35.9
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.4e-11 74.7 343 30.0
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.8e-11 74.3 329 34.7
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.4e-11 73.9 318 39.3
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.1e-11 73.6 351 33.3
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 5.4e-11 72.8 186 35.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-11 72.8 181 35.4
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.4e-11 72.8 350 39.4
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 5.4e-11 72.8 340 34.7
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.0e-11 72.4 319 27.6
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.1e-11 72.0 298 39.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.1e-11 72.0 155 35.5
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 9.1e-11 72.0 195 37.4
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.2e-10 71.6 229 32.3
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-10 71.2 346 34.7
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-10 71.2 346 34.7
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.0e-10 70.9 179 32.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.7e-10 70.5 318 33.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.5e-10 70.1 149 36.2
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.5e-10 70.1 156 35.3
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.5e-10 70.1 319 28.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.5e-10 70.1 85 51.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.5e-10 70.1 85 51.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 4.5e-10 69.7 301 44.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 5.9e-10 69.3 336 32.7
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 5.9e-10 69.3 191 29.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.9e-10 69.3 350 33.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.0e-09 68.6 178 33.1
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.3e-09 68.2 214 37.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.3e-09 68.2 317 33.4
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.7e-09 67.8 196 31.6
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.3e-09 67.4 349 30.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.9e-09 67.0 170 34.1
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-09 67.0 192 32.3
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 5.0e-09 66.2 88 48.9
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 8.6e-09 65.5 341 37.8
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 8.6e-09 65.5 358 30.4
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 8.6e-09 65.5 209 32.1
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 8.6e-09 65.5 325 30.2
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.1e-08 65.1 145 35.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.1e-08 65.1 203 40.4
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.5e-08 64.7 327 36.1
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.9e-08 64.3 178 32.0
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.9e-08 64.3 180 37.8
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-08 64.3 194 30.4
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.5e-08 63.9 209 35.9
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.5e-08 63.9 143 49.7
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-08 63.9 346 36.7
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.5e-08 63.9 190 31.1
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.3e-08 63.5 174 47.1
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-08 63.5 147 34.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 3.3e-08 63.5 178 36.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 4.2e-08 63.2 171 31.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.2e-08 63.2 304 38.8
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 4.2e-08 63.2 201 30.8
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 7.2e-08 62.4 191 29.8
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 9.5e-08 62.0 355 34.4
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 1.2e-07 61.6 333 37.5
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.2e-07 61.6 164 31.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.6e-07 61.2 164 31.7
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-07 61.2 327 35.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.6e-07 60.1 143 32.9
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.7e-07 59.7 301 39.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.0e-07 58.9 165 33.9
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 8.0e-07 58.9 171 34.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 8.0e-07 58.9 164 30.5
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.0e-06 58.5 158 30.4
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 1.4e-06 58.2 165 30.9
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.8e-06 57.8 183 33.3
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.3e-06 57.4 343 33.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.3e-06 57.4 182 34.1
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 2.3e-06 57.4 223 41.3
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.0e-06 57.0 135 32.6
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 4.0e-06 56.6 148 33.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.2e-06 56.2 157 32.5
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 6.8e-06 55.8 354 38.1


User provided reference genes

Program Settings