Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.5e-237 825.1 428 100.0
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 2.9e-153 545.8 427 65.6
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 9.6e-72 275.0 403 41.7
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 9.3e-67 258.5 406 39.2
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.3e-65 254.6 371 41.5
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 5.1e-65 252.7 390 39.5
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 6.7e-65 252.3 394 40.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 8.7e-65 251.9 423 40.7
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 1.1e-64 251.5 371 40.7
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 1.5e-64 251.1 392 39.3
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 2.5e-64 250.4 371 40.2
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.3e-64 249.6 384 40.4
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 4.3e-64 249.6 389 38.8
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 2.2e-63 247.3 388 40.2
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 2.2e-63 247.3 371 39.6
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 2.2e-63 247.3 371 41.8
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 2.8e-63 246.9 385 39.0
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 2.8e-63 246.9 386 40.7
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 2.8e-63 246.9 404 39.9
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 3.7e-63 246.5 362 43.4
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 4.8e-63 246.1 386 39.9
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 8.2e-63 245.4 384 38.3
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.1e-62 245.0 380 40.3
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 1.4e-62 244.6 376 39.9
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 1.8e-62 244.2 369 39.0
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 1.2e-61 241.5 359 40.7
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.0e-61 240.7 375 40.5
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 2.6e-61 240.4 391 38.4
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 7.7e-61 238.8 357 40.3
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 1.0e-60 238.4 434 36.4
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 1.3e-60 238.0 366 38.3
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 1.7e-60 237.7 357 40.1
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 2.2e-60 237.3 433 37.2
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 2.9e-60 236.9 363 39.1
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.9e-60 236.9 356 38.5
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 3.8e-60 236.5 382 38.2
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 5.0e-60 236.1 361 40.4
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 6.5e-60 235.7 378 38.4
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 8.5e-60 235.3 393 38.4
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 8.5e-60 235.3 393 38.4
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 1.4e-59 234.6 358 38.3
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 1.9e-59 234.2 366 37.4
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.5e-59 233.8 357 39.8
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 3.2e-59 233.4 358 40.5
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 4.2e-59 233.0 417 36.5
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 5.5e-59 232.6 357 39.8
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 1.6e-58 231.1 399 37.1
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.1e-58 230.7 359 40.1
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 2.7e-58 230.3 390 40.5
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 3.6e-58 229.9 373 38.9
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 3.6e-58 229.9 391 38.6
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 4.6e-58 229.6 386 38.6
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 6.1e-58 229.2 388 38.9
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 7.9e-58 228.8 373 38.6
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.0e-57 228.4 373 38.1
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 1.0e-57 228.4 358 37.4
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.4e-57 228.0 383 40.2
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.4e-57 228.0 388 37.4
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 5.1e-57 226.1 416 38.7
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 6.7e-57 225.7 364 38.2
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 1.1e-56 224.9 324 43.8
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 2.5e-56 223.8 386 39.6
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 2.5e-56 223.8 368 37.8
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 2.2e-55 220.7 385 40.3
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 2.8e-55 220.3 387 37.7
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 2.8e-55 220.3 414 36.5
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 3.7e-55 219.9 332 41.0
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 8.2e-55 218.8 377 37.7
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.8e-54 217.6 381 38.6
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 3.1e-54 216.9 336 38.4
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 4.1e-54 216.5 381 38.8
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 1.2e-53 214.9 372 37.1
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 1.5e-53 214.5 374 36.4
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.0e-53 214.2 372 37.9
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 7.7e-53 212.2 380 37.9
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 7.7e-53 212.2 380 37.9
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 7.7e-53 212.2 337 39.8
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 1.0e-52 211.8 385 37.1
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 1.0e-52 211.8 365 35.1
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 2.2e-52 210.7 377 37.4
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 2.2e-52 210.7 370 36.5
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 2.2e-52 210.7 361 37.7
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 2.2e-52 210.7 332 40.1
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 2.2e-52 210.7 368 36.1
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 2.9e-52 210.3 359 37.9
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 3.2e-51 206.8 318 40.6
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 2.1e-50 204.1 376 37.0
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 4.7e-50 203.0 378 37.3
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 5.1e-49 199.5 378 37.0
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 6.7e-49 199.1 300 41.0
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 2.6e-48 197.2 375 36.8
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 8.2e-47 192.2 406 35.5
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 1.2e-45 188.3 301 40.2
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 1.5e-45 188.0 357 35.6
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 1.1e-43 181.8 389 33.7
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 5.2e-41 172.9 279 37.3
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 9.7e-40 168.7 245 44.5
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.4e-38 164.9 272 36.0
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 4.1e-38 163.3 313 37.1
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.0e-32 144.4 246 41.1
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.0e-32 144.4 246 41.1
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 7.5e-32 142.5 357 32.5
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 9.1e-30 135.6 330 29.7
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 5.7e-24 116.3 234 37.2
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 5.7e-24 116.3 333 29.7
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 6.3e-23 112.8 188 40.4
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 4.2e-19 100.1 224 34.4
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 1.6e-18 98.2 337 27.9
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 2.3e-17 94.4 150 36.7
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.0e-17 94.0 139 39.6
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.0e-17 94.0 139 39.6
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 8.9e-17 92.4 129 45.7
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 2.7e-13 80.9 162 35.2
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.3e-12 78.6 241 32.0
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 1.3e-12 78.6 130 37.7
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 5.0e-12 76.6 117 38.5


User provided reference genes

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