Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0490600 Oryza sativa ssp. japonica HOM05D002793 ORTHO05D002965 1.8e-211 739.2 417 100.0
Zm00001eb169480 Zea mays HOM05D002793 ORTHO05D002965 1.0e-86 324.7 441 54.4
Ciclev10031707m.g Citrus clementina HOM05D002793 ORTHO05D002965 4.3e-16 90.1 462 27.5
Nn3g16401 Nelumbo nucifera HOM05D002793 ORTHO05D002965 1.1e-14 85.5 448 27.9
TWI18G1253 Tripterygium wilfordii HOM05D002793 ORTHO05D002965 4.0e-14 83.6 448 27.9
Haze_12447 Corylus avellana HOM05D002793 ORTHO05D002965 1.2e-13 82.0 454 28.2
Potri.003G168700 Populus trichocarpa HOM05D002793 ORTHO05D002965 2.0e-13 81.3 447 26.8
Gohir.D02G146600 Gossypium hirsutum HOM05D002793 ORTHO05D002965 2.6e-13 80.9 469 26.4
HPP92_023387 Vanilla planifolia HOM05D002793 ORTHO05D002965 3.4e-13 80.5 446 28.9
Gorai.005G164100 Gossypium raimondii HOM05D002793 ORTHO05D002965 9.9e-13 79.0 469 26.4
CSS0013139 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 1.7e-12 78.2 464 27.2
TWI36G0224 Tripterygium wilfordii HOM05D002793 ORTHO05D002965 2.2e-12 77.8 452 27.2
QL03p051728 Quercus lobata HOM05D002793 ORTHO05D002965 2.9e-12 77.4 464 26.7
PGSC0003DMG401019811 Solanum tuberosum HOM05D002793 ORTHO05D002965 8.4e-12 75.9 452 27.4
Actinidia39798 Actinidia chinensis HOM05D002793 ORTHO05D002965 4.1e-11 73.6 458 27.3
Aqoxy5G03293 Aquilegia oxysepala HOM05D002793 ORTHO05D002965 7.1e-11 72.8 431 26.5
Lsat_1_v5_gn_3_31200 Lactuca sativa HOM05D002793 ORTHO05D002965 9.2e-11 72.4 447 28.0
Dinv11689 Davidia involucrata HOM05D002793 ORTHO05D002965 1.2e-10 72.0 456 25.9
MBI11_g05335_MAGBIO Magnolia biondii HOM05D002793 ORTHO05D002965 1.2e-10 72.0 297 31.3
Rhsim12G0094800 Rhododendron simsii HOM05D002793 ORTHO05D002965 1.2e-10 72.0 485 26.6
Lj1g0015564 Lotus japonicus HOM05D002793 ORTHO05D002965 2.7e-10 70.9 468 25.2
Medtr7g028590 Medicago truncatula HOM05D002793 ORTHO05D002965 4.6e-10 70.1 463 24.6
Solyc05g015880.3 Solanum lycopersicum HOM05D002793 ORTHO05D002965 4.6e-10 70.1 452 27.4
Potri.001G327500 Populus trichocarpa HOM05D002793 ORTHO05D002965 6.0e-10 69.7 459 25.9
Cpa.g.sc286.6 Carica papaya HOM05D002793 ORTHO05D002965 7.8e-10 69.3 452 26.8
Glyma.20G249200 Glycine max HOM05D002793 ORTHO05D002965 7.8e-10 69.3 449 25.6
Duzib268G1080 Durio zibethinus HOM05D002793 ORTHO05D002965 1.0e-09 68.9 465 26.5
PGR142G0558 Punica granatum HOM05D002793 ORTHO05D002965 1.0e-09 68.9 448 24.3
Gohir.A03G124200 Gossypium hirsutum HOM05D002793 ORTHO05D002965 2.3e-09 67.8 463 25.7
Thecc.02G201800 Theobroma cacao HOM05D002793 ORTHO05D002965 3.9e-09 67.0 463 25.7
CsaV3_6G008130 Cucumis sativus L. HOM05D002793 ORTHO05D002965 6.6e-09 66.2 484 24.4
ECA246G3465 Erigeron canadensis HOM05D002793 ORTHO05D002965 8.7e-09 65.9 455 27.0
Manes.12G008500 Manihot esculenta HOM05D002793 ORTHO05D002965 8.7e-09 65.9 452 27.7
CiPaw.05G107100 Carya illinoinensis HOM05D002793 ORTHO05D002965 1.5e-08 65.1 456 29.4
FvH4_4g23460 Fragaria vesca HOM05D002793 ORTHO05D002965 1.9e-08 64.7 441 26.5
FAN12G0240 Fragaria x ananassa HOM05D002793 ORTHO05D002965 1.9e-08 64.7 441 26.5
Manes.13G009000 Manihot esculenta HOM05D002793 ORTHO05D002965 2.5e-08 64.3 457 26.0
Phvul.007G001200 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 3.3e-08 63.9 449 31.0
arahy.Tifrunner.gnm1.ann1.ZG4VZM Arachis hypogaea HOM05D002793 ORTHO05D002965 4.3e-08 63.5 475 23.6
COL.COLO4_05010 Corchorus olitorius HOM05D002793 ORTHO05D002965 4.3e-08 63.5 486 24.3
Haze_14896 Corylus avellana HOM05D002793 ORTHO05D002965 5.6e-08 63.2 478 24.5
CSS0028551 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 7.3e-08 62.8 284 28.9
Peaxi162Scf00128g01542 Petunia axillaris HOM05D002793 ORTHO05D002965 7.3e-08 62.8 448 29.7
VMungo0720G0739 Vigna mungo HOM05D002793 ORTHO05D002965 7.3e-08 62.8 347 34.9
GSVIVG01010528001 Vitis vinifera HOM05D002793 ORTHO05D002965 7.3e-08 62.8 481 25.4
Glyma.16G054300 Glycine max HOM05D002793 ORTHO05D002965 9.6e-08 62.4 481 24.3
Sabra03G0123600 Salix brachista HOM05D002793 ORTHO05D002965 9.6e-08 62.4 420 25.5
Atru.chr11.2359 Acer truncatum HOM05D002793 ORTHO05D002965 1.6e-07 61.6 471 24.8
Medtr3g085710 Medicago truncatula HOM05D002793 ORTHO05D002965 1.6e-07 61.6 434 25.1
Potri.001G059100 Populus trichocarpa HOM05D002793 ORTHO05D002965 1.6e-07 61.6 447 24.8
Gorai.009G332000 Gossypium raimondii HOM05D002793 ORTHO05D002965 2.1e-07 61.2 467 26.6
Nitab4.5_0000542g0010 Nicotiana tabacum HOM05D002793 ORTHO05D002965 3.6e-07 60.5 440 24.3
Psat3g185960 Pisum sativum HOM05D002793 ORTHO05D002965 3.6e-07 60.5 454 25.1
Duzib147G0228 Durio zibethinus HOM05D002793 ORTHO05D002965 4.7e-07 60.1 448 24.1
MSTRG.484 Avicennia marina HOM05D002793 ORTHO05D002965 6.2e-07 59.7 451 24.4
MD13G1122400 Malus domestica HOM05D002793 ORTHO05D002965 6.2e-07 59.7 450 26.2
RcHm_v2.0_Chr4g0429831 Rosa chinensis HOM05D002793 ORTHO05D002965 6.2e-07 59.7 441 27.9
Thecc.04G040100 Theobroma cacao HOM05D002793 ORTHO05D002965 6.2e-07 59.7 447 24.8
CSS0004091 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 8.1e-07 59.3 454 24.4
Manes.11G086900 Manihot esculenta HOM05D002793 ORTHO05D002965 8.1e-07 59.3 433 26.1
Gohir.D05G311000 Gossypium hirsutum HOM05D002793 ORTHO05D002965 1.1e-06 58.9 467 26.3
Lj6A830G30 Lonicera japonica HOM05D002793 ORTHO05D002965 1.1e-06 58.9 412 23.3
Gohir.A05G310200 Gossypium hirsutum HOM05D002793 ORTHO05D002965 1.4e-06 58.5 464 26.3
Lalb_Chr00c01g0403751 Lupinus albus HOM05D002793 ORTHO05D002965 1.8e-06 58.2 450 24.9
Lalb_Chr02g0144551 Lupinus albus HOM05D002793 ORTHO05D002965 2.4e-06 57.8 442 25.1
Prupe.1G222800 Prunus persica HOM05D002793 ORTHO05D002965 2.4e-06 57.8 447 27.7
arahy.Tifrunner.gnm1.ann1.QV3UQR Arachis hypogaea HOM05D002793 ORTHO05D002965 3.1e-06 57.4 457 22.5
Nn4g22259 Nelumbo nucifera HOM05D002793 ORTHO05D002965 3.1e-06 57.4 438 26.5
Sopen05g011570 Solanum pennellii HOM05D002793 ORTHO05D002965 3.1e-06 57.4 446 26.5
THA.LOC104825488 Tarenaya hassleriana HOM05D002793 ORTHO05D002965 3.1e-06 57.4 453 24.5
arahy.Tifrunner.gnm1.ann1.BJT98M Arachis hypogaea HOM05D002793 ORTHO05D002965 4.0e-06 57.0 463 25.1
arahy.Tifrunner.gnm1.ann1.S8FHU4 Arachis hypogaea HOM05D002793 ORTHO05D002965 4.0e-06 57.0 463 25.1
CAN.G610.4 Capsicum annuum HOM05D002793 ORTHO05D002965 4.0e-06 57.0 444 25.7
Glyma.19G094600 Glycine max HOM05D002793 ORTHO05D002965 4.0e-06 57.0 468 24.6
MD16G1122900 Malus domestica HOM05D002793 ORTHO05D002965 4.0e-06 57.0 240 28.8
CSS0011475 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 5.2e-06 56.6 458 25.1
CSS0030379 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 5.2e-06 56.6 353 26.1
CSS0031398 Camellia sinensis var. sinensis HOM05D002793 ORTHO05D002965 5.2e-06 56.6 482 24.9
Phvul.001G088600 Phaseolus vulgaris HOM05D002793 ORTHO05D002965 5.2e-06 56.6 462 24.5
Sed0009839 Sechium edule HOM05D002793 ORTHO05D002965 6.9e-06 56.2 442 26.0
Medtr7g022360 Medicago truncatula HOM05D002793 ORTHO05D002965 9.0e-06 55.8 462 24.2


User provided reference genes

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