Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 5.8e-93 344.4 192 100.0
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 2.7e-58 229.2 212 62.3
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 3.7e-55 218.8 188 61.7
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.4e-54 216.9 177 66.1
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.2e-53 213.8 189 60.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 2.2e-52 209.5 177 61.6
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.2e-52 209.5 177 63.3
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 8.5e-52 207.6 188 60.1
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 8.5e-52 207.6 177 63.8
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.9e-51 206.5 177 63.3
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.7e-50 202.6 177 61.6
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 6.1e-50 201.4 178 61.2
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 7.9e-50 201.1 177 61.0
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.3e-49 199.5 177 61.0
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.3e-49 199.5 189 56.6
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 3.0e-49 199.1 177 60.5
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 5.1e-49 198.4 177 60.5
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.7e-49 198.0 177 61.0
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.8e-49 197.6 177 59.3
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 1.5e-48 196.8 182 58.2
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 2.0e-48 196.4 177 61.0
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 2.6e-48 196.1 177 60.5
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 3.3e-48 195.7 178 59.6
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 4.4e-48 195.3 178 61.8
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 5.7e-48 194.9 177 59.3
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 5.7e-48 194.9 178 57.3
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.7e-47 193.4 178 57.9
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 2.8e-47 192.6 177 58.2
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.8e-47 191.8 177 59.3
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.8e-47 191.8 177 59.3
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 4.8e-47 191.8 177 57.6
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.1e-46 190.7 177 59.9
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.1e-46 190.7 177 59.3
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.1e-46 190.7 179 58.7
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.4e-46 190.3 184 57.1
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 1.4e-46 190.3 178 56.2
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.8e-46 189.9 177 57.6
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 2.4e-46 189.5 177 58.8
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.1e-46 188.7 177 58.2
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 5.3e-46 188.3 177 58.2
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 7.0e-46 188.0 178 56.7
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.1e-46 187.6 177 58.2
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.2e-45 187.2 179 59.8
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.5e-45 186.8 176 58.0
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 1.5e-45 186.8 177 55.9
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 2.0e-45 186.4 176 57.4
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.6e-45 186.0 169 60.4
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 3.4e-45 185.7 177 57.1
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 4.5e-45 185.3 177 57.6
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 7.7e-45 184.5 178 54.5
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 1.0e-44 184.1 177 56.5
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.3e-44 183.7 175 56.6
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.7e-44 183.3 177 55.9
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.7e-44 183.3 174 56.9
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.2e-44 183.0 179 56.4
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.9e-44 182.6 176 56.2
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 5.0e-44 181.8 189 55.0
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 8.5e-44 181.0 177 54.8
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 8.5e-44 181.0 177 55.9
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 1.1e-43 180.6 175 56.0
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.4e-43 180.3 179 55.9
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.4e-43 180.3 179 54.2
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.5e-43 179.5 178 55.6
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.5e-43 179.5 178 54.5
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.5e-43 179.5 177 55.4
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.2e-43 179.1 179 58.1
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 5.5e-43 178.3 175 55.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 5.5e-43 178.3 175 54.9
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.2e-42 177.2 179 53.1
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 2.7e-42 176.0 175 54.3
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 2.7e-42 176.0 175 56.0
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 6.1e-42 174.9 175 54.9
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.0e-41 174.1 175 54.9
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 1.8e-41 173.3 177 51.4
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 3.0e-41 172.6 177 53.1
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 3.9e-41 172.2 176 55.1
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 3.9e-41 172.2 176 55.1
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 6.7e-41 171.4 166 54.2
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.5e-40 170.2 176 54.5
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.5e-40 170.2 176 54.5
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 3.7e-39 165.6 175 52.0
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.4e-38 163.7 151 60.9
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.8e-38 163.3 177 51.4
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 1.2e-37 160.6 150 56.7
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.6e-37 160.2 179 48.6
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 2.0e-37 159.8 156 57.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.0e-37 159.8 153 54.9
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 4.5e-37 158.7 253 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 2.2e-36 156.4 178 47.2
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 2.2e-36 156.4 127 62.2
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 2.2e-36 156.4 169 52.7
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 2.9e-36 156.0 127 60.6
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.9e-35 153.3 177 50.3
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 6.1e-34 148.3 129 60.5
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.4e-33 147.1 208 43.8
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.6e-32 142.9 179 44.7
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 7.5e-32 141.4 129 58.9
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 6.3e-31 138.3 175 43.4
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.0e-28 131.0 108 60.2
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 8.5e-28 127.9 150 48.0
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 3.2e-27 125.9 111 58.6
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 1.2e-26 124.0 171 43.3
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 1.4e-25 120.6 171 43.9
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 7.0e-22 108.2 125 50.4
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 4.5e-13 79.0 77 54.5
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 1.9e-11 73.6 68 61.8
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.0e-08 63.5 156 27.6
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.7e-07 60.5 45 60.0
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.4e-06 57.4 55 56.4


User provided reference genes

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