Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.1e-94 347.8 186 100.0
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 8.0e-47 191.0 159 69.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.1e-39 166.4 160 60.0
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.3e-35 151.8 172 54.7
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 2.6e-29 132.9 173 46.8
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 3.4e-29 132.5 162 50.0
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.7e-28 130.2 167 49.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 6.3e-28 128.3 153 50.3
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 6.3e-28 128.3 156 50.6
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 1.1e-27 127.5 157 49.7
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.1e-27 127.5 164 50.0
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-27 127.5 158 50.6
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.4e-27 127.1 159 51.6
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.8e-27 126.7 166 49.4
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 2.4e-27 126.3 163 50.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 7.0e-27 124.8 164 49.4
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.1e-27 124.4 156 48.7
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 9.1e-27 124.4 161 47.8
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.2e-26 124.0 164 50.0
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.2e-26 124.0 159 48.4
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.6e-26 123.6 159 52.8
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.6e-26 123.6 160 47.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.6e-26 123.6 159 50.3
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 3.5e-26 122.5 162 49.4
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 5.9e-26 121.7 162 46.3
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 5.9e-26 121.7 162 46.3
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.7e-25 120.2 156 48.7
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.7e-25 120.2 157 47.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.3e-25 119.8 167 47.9
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.9e-25 119.4 164 47.0
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.9e-25 119.4 156 47.4
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.9e-25 119.4 158 46.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.9e-25 119.4 159 47.2
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 3.8e-25 119.0 164 47.6
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.0e-25 118.6 157 47.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.0e-25 118.6 158 46.8
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 5.0e-25 118.6 167 46.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.0e-25 118.6 156 47.4
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 5.0e-25 118.6 158 48.7
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 8.6e-25 117.9 161 45.3
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.5e-24 117.1 155 46.5
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.9e-24 116.7 156 47.4
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.5e-24 116.3 155 48.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.5e-24 116.3 161 50.3
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 2.5e-24 116.3 163 47.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 4.2e-24 115.5 160 48.1
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 4.2e-24 115.5 155 47.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.5e-24 115.2 156 48.1
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 9.5e-24 114.4 181 44.2
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 9.5e-24 114.4 158 48.7
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 9.5e-24 114.4 154 46.1
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.6e-23 113.6 162 44.4
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 2.8e-23 112.8 153 49.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 2.8e-23 112.8 153 49.0
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 3.6e-23 112.5 152 48.7
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.6e-23 112.5 172 45.3
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.6e-23 112.5 166 45.2
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 4.7e-23 112.1 153 48.4
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 6.1e-23 111.7 161 45.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.1e-23 111.7 160 45.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 8.0e-23 111.3 180 45.0
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 8.0e-23 111.3 161 47.8
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 1.8e-22 110.2 153 48.4
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-22 110.2 159 47.2
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.8e-22 110.2 152 45.4
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.0e-22 109.0 147 46.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 5.2e-22 108.6 159 46.5
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 6.8e-22 108.2 163 44.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 8.9e-22 107.8 158 44.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.2e-21 107.5 158 46.2
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.2e-21 107.5 157 45.2
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.5e-21 107.1 153 46.4
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-21 107.1 156 46.2
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.5e-21 107.1 162 46.9
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.5e-21 107.1 152 45.4
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.5e-21 107.1 162 45.7
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 2.0e-21 106.7 156 46.2
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.0e-21 106.7 156 44.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 3.4e-21 105.9 162 44.4
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 4.4e-21 105.5 157 45.2
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 5.7e-21 105.1 162 44.4
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 5.7e-21 105.1 162 46.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 7.5e-21 104.8 160 44.4
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 9.8e-21 104.4 167 42.5
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 9.8e-21 104.4 155 47.1
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.7e-20 103.6 130 48.5
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.7e-20 103.6 162 42.0
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.7e-20 103.6 163 42.9
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.2e-20 103.2 155 43.2
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.2e-20 103.2 153 44.4
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 4.9e-20 102.1 175 43.4
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.9e-20 102.1 161 42.2
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 6.3e-20 101.7 157 46.5
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 8.3e-20 101.3 166 44.0
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.4e-19 100.5 158 43.7
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.8e-19 100.1 168 44.0
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.4e-19 99.8 151 45.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 4.1e-19 99.0 161 45.3
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.6e-18 97.1 173 39.9
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.6e-18 97.1 174 39.7
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.8e-18 94.7 112 50.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.8e-18 94.7 149 44.3
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.0e-17 94.4 149 43.6
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.7e-17 93.6 133 45.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.3e-17 93.2 149 43.0
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.9e-17 92.4 74 63.5
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 8.6e-17 91.3 149 43.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.6e-17 91.3 148 42.6
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.1e-16 90.9 172 40.1
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.5e-16 90.5 147 44.2
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.5e-16 90.5 147 44.2
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-16 90.1 148 42.6
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.5e-16 89.7 120 44.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 3.3e-16 89.4 203 36.9
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.6e-15 87.0 143 44.1
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.8e-15 86.3 109 45.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 3.6e-15 85.9 143 40.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.1e-14 82.8 107 47.7
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 6.8e-14 81.6 155 40.0
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.3e-12 77.4 111 41.4
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 4.9e-12 75.5 96 47.9
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.4e-12 75.1 82 53.7
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.9e-11 73.6 134 40.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 7.0e-11 71.6 120 43.3
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 9.2e-11 71.2 134 39.6
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 2.0e-10 70.1 122 45.1
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 3.5e-10 69.3 161 38.5
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 6.0e-10 68.6 104 45.2
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.9e-09 65.9 83 44.6
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.5e-08 63.9 77 46.8
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 7.3e-08 61.6 150 35.3
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.2e-07 60.8 163 32.5
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.2e-07 60.8 101 46.5
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 8.0e-07 58.2 71 47.9
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.4e-06 57.4 61 50.8
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.3e-06 56.6 45 57.8


User provided reference genes

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