Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 5.0e-154 547.7 278 100.0
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.2e-117 426.0 263 81.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 2.7e-91 339.3 282 60.6
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 6.0e-91 338.2 282 60.3
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.3e-90 337.0 280 61.8
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.3e-90 337.0 280 62.1
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.3e-90 337.0 280 62.1
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 3.0e-90 335.9 280 61.4
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 8.7e-90 334.3 280 60.4
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.1e-89 334.0 280 60.0
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 1.5e-89 333.6 283 60.1
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.9e-89 333.2 282 57.8
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 3.7e-88 328.9 282 58.2
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 3.7e-88 328.9 282 58.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 3.7e-88 328.9 282 58.9
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.1e-87 327.4 284 58.8
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.4e-87 326.2 278 60.1
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 2.4e-87 326.2 281 60.9
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 6.9e-87 324.7 281 60.9
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 6.9e-87 324.7 284 57.7
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.2e-86 323.9 282 57.1
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 2.0e-86 323.2 276 59.1
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 2.6e-86 322.8 288 57.6
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 2.6e-86 322.8 279 59.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 4.5e-86 322.0 275 58.2
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 5.8e-86 321.6 273 62.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 9.9e-86 320.9 280 56.4
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 2.2e-85 319.7 283 58.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 3.8e-85 318.9 282 56.4
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 3.8e-85 318.9 283 58.7
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 6.4e-85 318.2 281 58.0
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 6.4e-85 318.2 283 59.4
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.9e-84 316.6 286 59.1
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.9e-84 316.6 286 58.4
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.9e-84 316.6 286 58.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.5e-84 316.2 285 57.9
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 7.1e-84 314.7 280 57.1
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 9.3e-84 314.3 280 56.8
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 2.1e-83 313.2 278 60.1
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.1e-83 313.2 290 55.9
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 2.1e-83 313.2 279 55.2
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 3.5e-83 312.4 285 56.5
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 3.5e-83 312.4 286 58.0
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 3.5e-83 312.4 277 58.8
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 3.5e-83 312.4 280 56.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.3e-82 310.5 277 58.1
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.8e-82 310.1 284 58.8
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.8e-82 310.1 280 57.5
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.3e-82 309.7 275 58.9
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 3.0e-82 309.3 275 57.5
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.9e-82 308.9 279 57.7
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.9e-82 308.9 282 57.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 5.1e-82 308.5 302 54.3
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 6.7e-82 308.1 285 56.1
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 8.7e-82 307.8 284 56.3
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 1.1e-81 307.4 283 55.1
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.1e-81 307.4 280 57.9
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.9e-81 306.6 289 57.8
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.9e-81 306.6 280 58.6
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 1.9e-81 306.6 279 55.6
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 4.3e-81 305.4 287 56.4
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 4.3e-81 305.4 287 55.4
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.3e-81 305.4 279 58.4
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 5.6e-81 305.1 279 57.3
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.4e-81 304.7 279 55.9
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.3e-80 303.9 279 56.3
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.3e-80 303.9 279 57.7
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 2.1e-80 303.1 284 54.2
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.1e-80 303.1 280 55.4
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 2.8e-80 302.8 279 57.0
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.7e-80 302.4 270 57.4
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 4.8e-80 302.0 275 56.0
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.8e-80 302.0 275 56.0
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 8.2e-80 301.2 279 55.6
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 2.4e-79 299.7 281 53.7
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.4e-79 299.7 276 54.7
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.1e-79 299.3 280 55.4
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.1e-79 299.3 241 60.6
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.0e-79 298.9 283 54.1
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 5.3e-79 298.5 281 56.6
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.9e-79 298.1 275 55.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 6.9e-79 298.1 280 58.2
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 9.0e-79 297.7 282 55.3
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.5e-78 297.0 280 55.7
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 2.6e-78 296.2 279 54.5
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.6e-78 296.2 280 55.4
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.4e-78 295.8 284 54.6
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 3.4e-78 295.8 270 55.2
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 7.6e-78 294.7 280 57.9
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.0e-77 294.3 283 53.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.0e-77 294.3 286 54.2
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.3e-77 293.9 284 54.2
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 1.7e-77 293.5 287 53.7
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 8.4e-77 291.2 273 53.5
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.1e-76 290.8 226 61.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.4e-76 290.4 235 60.4
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.6e-75 287.0 249 58.2
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 6.0e-75 285.0 281 53.7
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 8.7e-74 281.2 218 64.7
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 3.1e-71 272.7 214 64.5
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.2e-69 266.5 315 49.5
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 6.1e-67 258.5 227 56.4
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.3e-65 252.7 258 53.5
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.5e-62 243.8 247 50.2
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 7.7e-62 241.5 226 53.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 7.2e-60 235.0 201 57.2
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.4e-58 230.7 280 47.5
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.3e-56 224.2 186 55.4
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.4e-55 220.7 228 49.6
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 3.8e-53 212.6 282 42.6
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.5e-44 183.3 171 61.4
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.0e-42 177.9 141 56.7
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 7.5e-41 171.8 273 38.1
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 9.7e-41 171.4 145 63.4
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.7e-38 163.3 253 38.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 3.6e-35 152.9 119 61.3
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.2e-33 147.9 208 41.8
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.7e-33 145.6 183 41.5
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 6.3e-32 142.1 120 59.2
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 8.3e-32 141.7 239 35.1
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 4.2e-28 129.4 116 51.7
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.2e-27 127.9 245 36.7
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 8.0e-27 125.2 165 45.5
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.0e-26 123.2 112 54.5
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.4e-25 119.8 119 45.4
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 3.4e-25 119.8 118 48.3
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 5.4e-23 112.5 92 54.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 5.4e-23 112.5 105 58.1
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.3e-21 107.1 228 32.5
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.5e-20 103.6 248 31.5
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.9e-16 90.1 59 76.3
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.4e-15 87.0 59 74.6
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 8.6e-13 78.6 205 28.8
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.7e-08 63.2 34 76.5


User provided reference genes

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