Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0479000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.4e-69 266.2 132 100.0
Zm00001eb112970 Zea mays HOM05D018994 ORTHO05D001647 1.3e-35 153.3 123 66.7
Os12g0465100 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.4e-18 96.7 127 43.3
Os11g0502700 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.9e-18 96.3 113 46.0
Os12g0465000 Oryza sativa ssp. japonica HOM05D018994 ORTHO05D001647 1.2e-17 93.6 129 41.1
Zm00001eb170050 Zea mays HOM05D018994 ORTHO05D001647 1.7e-14 83.2 101 47.5
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 2.7e-09 65.9 125 33.6
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 2.7e-09 65.9 125 33.6
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 8.0e-09 64.3 123 36.6
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 1.0e-08 63.9 125 32.8
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 1.4e-08 63.5 95 35.8
Zm00001eb266630 Zea mays HOM05D018994 ORTHO05D001647 1.4e-08 63.5 81 49.4
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 1.8e-08 63.2 127 33.9
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.0e-08 62.4 126 33.3
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 3.0e-08 62.4 128 32.8
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 6.7e-08 61.2 127 32.3
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 1.2e-07 60.5 127 32.3
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 1.2e-07 60.5 127 31.5
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 2.0e-07 59.7 99 35.4
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.0e-07 59.7 128 33.6
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.0e-07 59.7 128 33.6
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 2.6e-07 59.3 126 31.0
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 3.3e-07 58.9 80 36.2
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 4.4e-07 58.5 99 35.4
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 5.7e-07 58.2 80 36.2
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 1.3e-06 57.0 121 30.6
Sc23g0006630 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.7e-06 56.6 123 28.5
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.7e-06 56.6 115 30.4
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.7e-06 56.6 115 30.4
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 1.7e-06 56.6 122 32.8
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 1.7e-06 56.6 123 30.1
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 2.8e-06 55.8 127 34.6
Lj4g0020170 Lotus japonicus HOM05D001817 ORTHO05D001647 2.8e-06 55.8 76 42.1
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 3.7e-06 55.5 119 26.1
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.8e-06 55.1 121 30.6
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.8e-06 55.1 121 30.6
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 4.8e-06 55.1 121 30.6
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 6.3e-06 54.7 121 29.8
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 8.2e-06 54.3 127 33.1
Lj6g0004190 Lotus japonicus HOM05D001817 ORTHO05D001647 8.2e-06 54.3 74 36.5
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 8.2e-06 54.3 121 30.6


User provided reference genes

Program Settings