Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0472600 Oryza sativa ssp. japonica HOM05D003040 ORTHO05D003443 9.0e-82 307.0 168 100.0
Zm00001eb169890 Zea mays HOM05D003040 ORTHO05D003443 9.8e-20 100.9 175 50.9
Lj1g0021745 Lotus japonicus HOM05D003040 ORTHO05D003443 2.8e-14 82.8 94 51.1
CiPaw.01G109100 Carya illinoinensis HOM05D003040 ORTHO05D003443 3.6e-14 82.4 104 47.1
Prupe.1G177300 Prunus persica HOM05D003040 ORTHO05D003443 8.0e-14 81.3 104 47.1
HPP92_025248 Vanilla planifolia HOM05D003040 ORTHO05D003443 1.4e-13 80.5 116 41.4
Hma1.2p1_0412F.1_g147250 Hydrangea macrophylla HOM05D003040 ORTHO05D003443 6.8e-13 78.2 86 51.2
Medtr7g021660 Medicago truncatula HOM05D003040 ORTHO05D003443 6.8e-13 78.2 103 46.6
Cfa008707 Carpinus fangiana HOM05D003040 ORTHO05D003443 8.9e-13 77.8 98 48.0
TPR.G2917 Trifolium pratense HOM05D003040 ORTHO05D003443 1.2e-12 77.4 88 51.1
Dinv09885 Davidia involucrata HOM05D003040 ORTHO05D003443 2.0e-12 76.6 88 52.3
Aqoxy2G04067 Aquilegia oxysepala HOM05D003040 ORTHO05D003443 2.6e-12 76.3 153 39.2
TAR636G3649 Trochodendron aralioides HOM05D003040 ORTHO05D003443 3.4e-12 75.9 116 41.4
Glyma.08G259300 Glycine max HOM05D003040 ORTHO05D003443 4.4e-12 75.5 137 38.0
Phvul.008G018000 Phaseolus vulgaris HOM05D003040 ORTHO05D003443 4.4e-12 75.5 132 40.2
Sc25g0005640 Simmondsia chinensis HOM05D003040 ORTHO05D003443 5.7e-12 75.1 86 45.3
CSS0033054 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 9.8e-12 74.3 109 44.0
FAN07G1530 Fragaria x ananassa HOM05D003040 ORTHO05D003443 9.8e-12 74.3 124 37.9
CANSAT78G2083 Cannabis sativa HOM05D003040 ORTHO05D003443 1.3e-11 73.9 110 40.9
Psat3g189120 Pisum sativum HOM05D003040 ORTHO05D003443 1.3e-11 73.9 89 47.2
FvH4_4g12280 Fragaria vesca HOM05D003040 ORTHO05D003443 1.7e-11 73.6 123 38.2
FAN12G3503 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.7e-11 73.6 123 38.2
TAR365G0675 Trochodendron aralioides HOM05D003040 ORTHO05D003443 1.7e-11 73.6 88 50.0
Glyma.18G283500 Glycine max HOM05D003040 ORTHO05D003443 2.2e-11 73.2 91 46.2
VMungo1383G1471 Vigna mungo HOM05D003040 ORTHO05D003443 2.2e-11 73.2 89 46.1
FAN22G2136 Fragaria x ananassa HOM05D003040 ORTHO05D003443 2.9e-11 72.8 137 36.5
Nn1g09813 Nelumbo nucifera HOM05D003040 ORTHO05D003443 2.9e-11 72.8 138 37.0
Oeu007221.1 Olea europaea HOM05D003040 ORTHO05D003443 2.9e-11 72.8 106 44.3
AUR62020938 Chenopodium quinoa HOM05D003040 ORTHO05D003443 3.7e-11 72.4 98 43.9
FAN12G1098 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.7e-11 72.4 123 38.2
FAN17G1608 Fragaria x ananassa HOM05D003040 ORTHO05D003443 3.7e-11 72.4 123 37.4
Potri.014G147000 Populus trichocarpa HOM05D003040 ORTHO05D003443 3.7e-11 72.4 89 46.1
PGR083G1221 Punica granatum HOM05D003040 ORTHO05D003443 3.7e-11 72.4 119 41.2
Sabra02G0178100 Salix brachista HOM05D003040 ORTHO05D003443 3.7e-11 72.4 90 43.3
Sed0022991 Sechium edule HOM05D003040 ORTHO05D003443 3.7e-11 72.4 93 37.6
HPP92_000352 Vanilla planifolia HOM05D003040 ORTHO05D003443 6.4e-11 71.6 94 45.7
Ciclev10012906m.g Citrus clementina HOM05D003040 ORTHO05D003443 1.1e-10 70.9 97 47.4
MBI11_g07423_MAGBIO Magnolia biondii HOM05D003040 ORTHO05D003443 1.1e-10 70.9 83 47.0
CAN.G484.127 Capsicum annuum HOM05D003040 ORTHO05D003443 1.4e-10 70.5 94 40.4
HPP92_000419 Vanilla planifolia HOM05D003040 ORTHO05D003443 1.4e-10 70.5 94 44.7
CSS0003515 Camellia sinensis var. sinensis HOM05D003040 ORTHO05D003443 1.8e-10 70.1 88 46.6
Lj3A380G19 Lonicera japonica HOM05D003040 ORTHO05D003443 1.8e-10 70.1 95 47.4
Haze_11716 Corylus avellana HOM05D003040 ORTHO05D003443 2.4e-10 69.7 161 35.4
DCAR_027482 Daucus carota HOM05D003040 ORTHO05D003443 3.2e-10 69.3 86 50.0
Migut.N00459 Erythranthe guttata HOM05D003040 ORTHO05D003443 4.1e-10 68.9 120 35.0
MBI07_g04009_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010091 5.4e-10 68.6 83 47.0
MD04G1027900 Malus domestica HOM05D003040 ORTHO05D003443 5.4e-10 68.6 156 34.6
QL10p044472 Quercus lobata HOM05D003040 ORTHO05D003443 5.4e-10 68.6 97 44.3
Prupe.6G360900 Prunus persica HOM05D003040 ORTHO05D003443 1.6e-09 67.0 94 46.8
Thecc.05G199700 Theobroma cacao HOM05D003040 ORTHO05D003443 1.6e-09 67.0 99 44.4
MSTRG.24594 Avicennia marina HOM05D003040 ORTHO05D003443 2.0e-09 66.6 99 41.4
Eucgr.H00463 Eucalyptus grandis HOM05D003040 ORTHO05D003443 2.7e-09 66.2 84 45.2
Duzib268G1790 Durio zibethinus HOM05D003040 ORTHO05D003443 3.5e-09 65.9 88 40.9
RcHm_v2.0_Chr4g0410351 Rosa chinensis HOM05D003040 ORTHO05D003443 4.6e-09 65.5 140 32.9
TWI09G0779 Tripterygium wilfordii HOM05D003040 ORTHO05D003443 4.6e-09 65.5 94 44.7
Cc03_g10850 Coffea canephora HOM05D003040 ORTHO05D003443 7.8e-09 64.7 116 33.6
Potri.002G233400 Populus trichocarpa HOM05D003040 ORTHO05D003443 7.8e-09 64.7 120 35.8
Ah.13g077600 Amaranthus hybridus HOM05D000425 ORTHO05D007728 1.0e-08 64.3 108 39.8
FAN14G2832 Fragaria x ananassa HOM05D003040 ORTHO05D003443 1.0e-08 64.3 101 40.6
PGSC0003DMG402004586 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.0e-08 64.3 94 37.2
Peaxi162Scf00286g00236 Petunia axillaris HOM05D003040 ORTHO05D003443 1.7e-08 63.5 78 46.2
Duzib128G0697 Durio zibethinus HOM05D003040 ORTHO05D003443 2.3e-08 63.2 133 36.1
Rhsim09G0035800 Rhododendron simsii HOM05D003040 ORTHO05D003443 2.3e-08 63.2 101 43.6
CARHR026960 Cardamine hirsuta HOM05D003040 ORTHO05D003443 3.0e-08 62.8 79 45.6
Sopen12g033470 Solanum pennellii HOM05D003040 ORTHO05D003443 3.9e-08 62.4 94 38.3
PGR031G3166 Punica granatum HOM05D003040 ORTHO05D003443 5.0e-08 62.0 104 37.5
Duzib268G1117 Durio zibethinus HOM05D003040 ORTHO05D003443 6.6e-08 61.6 154 31.2
PSO017G5902 Papaver somniferum HOM05D003040 ORTHO05D003443 6.6e-08 61.6 109 38.5
GSVIVG01031660001 Vitis vinifera HOM05D003040 ORTHO05D003443 6.6e-08 61.6 101 45.5
PSO675G7126 Papaver somniferum HOM05D003040 ORTHO05D003443 8.6e-08 61.2 111 40.5
SGA_v2.0_scaffold122G33178 Striga asiatica HOM05D003040 ORTHO05D003443 8.6e-08 61.2 88 40.9
RcHm_v2.0_Chr3g0447931 Rosa chinensis HOM05D003040 ORTHO05D003443 1.1e-07 60.8 85 43.5
PGSC0003DMG400021621 Solanum tuberosum HOM05D003040 ORTHO05D003443 1.1e-07 60.8 95 38.9
Thecc.04G192600 Theobroma cacao HOM05D003040 ORTHO05D003443 1.1e-07 60.8 87 41.4
QL01p048572 Quercus lobata HOM05D003040 ORTHO05D003443 1.5e-07 60.5 89 42.7
Dinv22709 Davidia involucrata HOM05D003040 ORTHO05D003443 1.9e-07 60.1 126 34.9
vmacro00570 Vaccinium macrocarpon HOM05D003040 ORTHO05D003443 1.9e-07 60.1 149 35.6
ATR0308G001 Amborella trichopoda HOM05D003040 ORTHO05D003443 2.5e-07 59.7 144 34.7
arahy.Tifrunner.gnm1.ann1.D458E1 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.5e-07 59.7 101 40.6
arahy.Tifrunner.gnm1.ann1.EIQ915 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.5e-07 59.7 101 40.6
COL.COLO4_27384 Corchorus olitorius HOM05D003040 ORTHO05D003443 2.5e-07 59.7 64 50.0
Lalb_Chr02g0144521 Lupinus albus HOM05D003040 ORTHO05D003443 2.5e-07 59.7 74 45.9
COL.COLO4_05703 Corchorus olitorius HOM05D003040 ORTHO05D003443 3.3e-07 59.3 147 30.6
Eucgr.H01387 Eucalyptus grandis HOM05D003040 ORTHO05D003443 3.3e-07 59.3 88 36.4
FvH4_6g00540 Fragaria vesca HOM05D003040 ORTHO05D003443 3.3e-07 59.3 104 37.5
PSO170G3622 Papaver somniferum HOM05D003040 ORTHO05D003443 4.3e-07 58.9 85 42.4
CAN.G710.53 Capsicum annuum HOM05D003040 ORTHO05D003443 5.6e-07 58.5 95 37.9
Cfa006269 Carpinus fangiana HOM05D003040 ORTHO05D003443 5.6e-07 58.5 97 41.2
Lsat_1_v5_gn_2_48200 Lactuca sativa HOM05D003040 ORTHO05D003443 5.6e-07 58.5 133 35.3
SalBow1G6107 Salvia bowleyana HOM05D000001 ORTHO05D010091 5.6e-07 58.5 81 43.2
SalBow6G3639 Salvia bowleyana HOM05D003040 ORTHO05D003443 5.6e-07 58.5 53 54.7
Hund07342 Selenicereus undatus HOM05D003040 ORTHO05D003443 5.6e-07 58.5 125 34.4
Atru.chr12.1791 Acer truncatum HOM05D003040 ORTHO05D003443 7.3e-07 58.2 99 39.4
CiPaw.07G079700 Carya illinoinensis HOM05D003040 ORTHO05D003443 7.3e-07 58.2 129 40.3
ECA238G0291 Erigeron canadensis HOM05D003040 ORTHO05D003443 7.3e-07 58.2 93 39.8
MD04G1244300 Malus domestica HOM05D003040 ORTHO05D003443 7.3e-07 58.2 131 32.8
PSO357G0622 Papaver somniferum HOM05D003040 ORTHO05D003443 7.3e-07 58.2 90 41.1
Zm00001eb364700 Zea mays HOM05D003040 ORTHO05D003443 7.3e-07 58.2 65 47.7
Haze_04549 Corylus avellana HOM05D003040 ORTHO05D003443 9.5e-07 57.8 104 38.5
Duzib177G0951 Durio zibethinus HOM05D003040 ORTHO05D003443 9.5e-07 57.8 61 49.2
Gohir.A05G391300 Gossypium hirsutum HOM05D003040 ORTHO05D003443 9.5e-07 57.8 65 50.8
GSVIVG01019115001 Vitis vinifera HOM05D003040 ORTHO05D003443 9.5e-07 57.8 123 34.1
Duzib151G0919 Durio zibethinus HOM05D003040 ORTHO05D003443 1.2e-06 57.4 95 35.8
Potri.013G086600 Populus trichocarpa HOM05D003040 ORTHO05D003443 1.2e-06 57.4 89 43.8
AT1G27380 Arabidopsis thaliana HOM05D003040 ORTHO05D003443 2.1e-06 56.6 52 50.0
arahy.Tifrunner.gnm1.ann1.XQNQ91 Arachis hypogaea HOM05D003040 ORTHO05D003443 2.1e-06 56.6 89 36.0
Cc09_g03590 Coffea canephora HOM05D003040 ORTHO05D003443 2.1e-06 56.6 86 39.5
Gohir.D04G025900 Gossypium hirsutum HOM05D003040 ORTHO05D003443 2.1e-06 56.6 65 49.2
Gorai.012G028500 Gossypium raimondii HOM05D003040 ORTHO05D003443 2.1e-06 56.6 65 49.2
BcaC01g01617 Brassica carinata HOM05D003040 ORTHO05D003443 2.8e-06 56.2 52 51.9
C03p73720 Brassica napus HOM05D003040 ORTHO05D003443 2.8e-06 56.2 52 51.9
BolC3t19663H Brassica oleracea HOM05D003040 ORTHO05D003443 2.8e-06 56.2 52 51.9
CANSAT54G0604 Cannabis sativa HOM05D003040 ORTHO05D003443 2.8e-06 56.2 54 55.6
Potri.019G053300 Populus trichocarpa HOM05D003040 ORTHO05D003443 2.8e-06 56.2 88 39.8
Sp1g23600 Schrenkiella parvula HOM05D003040 ORTHO05D003443 2.8e-06 56.2 88 39.8
arahy.Tifrunner.gnm1.ann1.UTHB0M Arachis hypogaea HOM05D003040 ORTHO05D003443 3.6e-06 55.8 81 38.3
BolC5t31327H Brassica oleracea HOM05D003040 ORTHO05D003443 3.6e-06 55.8 49 51.0
Nitab4.5_0001308g0120 Nicotiana tabacum HOM05D003040 ORTHO05D003443 3.6e-06 55.8 76 40.8
Peaxi162Scf00378g00633 Petunia axillaris HOM05D003040 ORTHO05D003443 3.6e-06 55.8 71 40.8
Sc16g0010350 Simmondsia chinensis HOM05D003040 ORTHO05D003443 3.6e-06 55.8 103 37.9
HPP92_009970 Vanilla planifolia HOM05D003040 ORTHO05D003443 3.6e-06 55.8 102 38.2
Aa31LG11G13170 Aethionema arabicum HOM05D003040 ORTHO05D003443 4.7e-06 55.5 81 37.0
Thhalv10009145m.g Eutrema salsugineum HOM05D003040 ORTHO05D003443 4.7e-06 55.5 87 39.1
Lalb_Chr10g0092111 Lupinus albus HOM05D003040 ORTHO05D003443 4.7e-06 55.5 96 37.5
Peaxi162Scf00048g00136 Petunia axillaris HOM05D003040 ORTHO05D003443 4.7e-06 55.5 56 51.8
Sp6g04060 Schrenkiella parvula HOM05D001059 ORTHO05D000873 4.7e-06 55.5 53 54.7
SpUn0051_0040 Schrenkiella parvula HOM05D001059 ORTHO05D000873 4.7e-06 55.5 53 54.7
AL1G40780 Arabidopsis lyrata HOM05D003040 ORTHO05D003443 6.2e-06 55.1 52 48.1
BcaC01g06956 Brassica carinata HOM05D003040 ORTHO05D003443 6.2e-06 55.1 52 50.0
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 6.2e-06 55.1 49 51.0
Migut.D00450 Erythranthe guttata HOM05D001059 ORTHO05D000873 6.2e-06 55.1 53 54.7
Nitab4.5_0002233g0050 Nicotiana tabacum HOM05D003040 ORTHO05D003443 6.2e-06 55.1 56 46.4
Sopen11g004660 Solanum pennellii HOM05D003040 ORTHO05D003443 6.2e-06 55.1 76 38.2
Actinidia35925 Actinidia chinensis HOM05D003040 ORTHO05D003443 8.0e-06 54.7 60 46.7
A07p11880 Brassica napus HOM05D003040 ORTHO05D003443 8.0e-06 54.7 48 54.2
BraA07t28972Z Brassica rapa HOM05D003040 ORTHO05D003443 8.0e-06 54.7 48 54.2
BraA09t39362Z Brassica rapa HOM05D003040 ORTHO05D003443 8.0e-06 54.7 49 53.1
Zm00001eb143410 Zea mays HOM05D003040 ORTHO05D000873 8.0e-06 54.7 65 58.5


User provided reference genes

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