Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0466300 Oryza sativa ssp. japonica HOM05D007180 ORTHO05D009028 1.1e-192 676.4 334 100.0
Zm00001eb156840 Zea mays HOM05D007180 ORTHO05D009028 1.5e-141 506.5 303 82.8
Aqoxy7G03907 Aquilegia oxysepala HOM05D007180 ORTHO05D009028 1.4e-110 403.7 309 63.1
Nn3g18173 Nelumbo nucifera HOM05D007180 ORTHO05D009028 7.7e-109 397.9 315 62.2
TAR383G0610 Trochodendron aralioides HOM05D007180 ORTHO05D009028 1.0e-108 397.5 309 60.2
Ciclev10026017m.g Citrus clementina HOM05D007180 ORTHO05D009028 5.0e-108 395.2 320 58.1
PGR102G1587 Punica granatum HOM05D007180 ORTHO05D009028 6.5e-108 394.8 321 58.9
GSVIVG01017035001 Vitis vinifera HOM05D007180 ORTHO05D009028 6.5e-108 394.8 320 57.5
PSO210G1533 Papaver somniferum HOM05D007180 ORTHO05D009028 1.5e-107 393.7 309 59.2
Atru.chr1.3471 Acer truncatum HOM05D007180 ORTHO05D009028 4.2e-107 392.1 319 58.6
PSO210G4764 Papaver somniferum HOM05D007180 ORTHO05D009028 4.2e-107 392.1 309 58.9
Prupe.3G062900 Prunus persica HOM05D007180 ORTHO05D009028 2.1e-106 389.8 320 57.2
FvH4_6g32020 Fragaria vesca HOM05D007180 ORTHO05D009028 6.1e-106 388.3 318 57.5
FAN14G2528 Fragaria x ananassa HOM05D007180 ORTHO05D009028 6.1e-106 388.3 318 57.5
MD17G1187500 Malus domestica HOM05D007180 ORTHO05D009028 1.0e-105 387.5 320 56.9
Thecc.06G096400 Theobroma cacao HOM05D007180 ORTHO05D009028 1.4e-105 387.1 323 58.2
MD09G1206800 Malus domestica HOM05D007180 ORTHO05D009028 3.0e-105 386.0 320 56.6
RcHm_v2.0_Chr2g0139631 Rosa chinensis HOM05D007180 ORTHO05D009028 3.0e-105 386.0 306 58.5
QL05p020883 Quercus lobata HOM05D007180 ORTHO05D009028 4.0e-105 385.6 311 58.8
Gohir.A02G119000 Gossypium hirsutum HOM05D007180 ORTHO05D009028 5.2e-105 385.2 326 57.7
CiPaw.02G147300 Carya illinoinensis HOM05D007180 ORTHO05D009028 8.8e-105 384.4 326 57.1
Gorai.003G063600 Gossypium raimondii HOM05D007180 ORTHO05D009028 2.6e-104 382.9 322 57.5
Gohir.D03G059800 Gossypium hirsutum HOM05D007180 ORTHO05D009028 1.7e-103 380.2 322 57.1
Duzib235G1436 Durio zibethinus HOM05D007180 ORTHO05D009028 2.8e-103 379.4 311 59.5
Glyma.08G202600 Glycine max HOM05D007180 ORTHO05D009028 2.8e-103 379.4 309 58.6
Lalb_Chr04g0262871 Lupinus albus HOM05D007180 ORTHO05D009028 2.8e-103 379.4 309 57.9
Medtr8g013830 Medicago truncatula HOM05D007180 ORTHO05D009028 4.8e-103 378.6 310 57.7
TWI75G1824 Tripterygium wilfordii HOM05D007180 ORTHO05D009028 6.3e-103 378.3 320 58.4
FAN02G1418 Fragaria x ananassa HOM05D007180 ORTHO05D009028 1.8e-102 376.7 318 56.0
Eucgr.F03061 Eucalyptus grandis HOM05D007180 ORTHO05D009028 2.4e-102 376.3 309 57.9
Glyma.07G017400 Glycine max HOM05D007180 ORTHO05D009028 3.1e-102 375.9 309 58.3
Hma1.2p1_1689F.1_g297640 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 3.1e-102 375.9 310 57.7
CANSAT56G0293 Cannabis sativa HOM05D007180 ORTHO05D009028 4.1e-102 375.6 326 55.2
Psat4g197600 Pisum sativum HOM05D007180 ORTHO05D009028 1.6e-101 373.6 309 57.3
Actinidia09001 Actinidia chinensis HOM05D007180 ORTHO05D009028 2.0e-101 373.2 318 56.9
Actinidia39147 Actinidia chinensis HOM05D007180 ORTHO05D009028 2.7e-101 372.9 308 58.4
Lj3g0006974 Lotus japonicus HOM05D007180 ORTHO05D009028 3.5e-101 372.5 309 57.9
TPR.G35011 Trifolium pratense HOM05D007180 ORTHO05D009028 4.5e-101 372.1 309 57.0
Cfa002118 Carpinus fangiana HOM05D007180 ORTHO05D009028 1.0e-100 370.9 322 56.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.0e-100 370.9 309 57.3
Haze_16331 Corylus avellana HOM05D007180 ORTHO05D009028 3.8e-100 369.0 339 55.5
Sp1g38710 Schrenkiella parvula HOM05D007180 ORTHO05D009028 5.0e-100 368.6 309 55.7
Sc10g0007260 Simmondsia chinensis HOM05D007180 ORTHO05D009028 8.5e-100 367.9 297 58.6
Carub.0001s4110 Capsella rubella HOM05D007180 ORTHO05D009028 1.1e-99 367.5 309 55.7
Phvul.010G146700 Phaseolus vulgaris HOM05D007180 ORTHO05D009028 1.9e-99 366.7 309 56.3
THA.LOC104810533 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 5.5e-99 365.2 319 55.8
CsaV3_7G033560 Cucumis sativus L. HOM05D007180 ORTHO05D009028 7.2e-99 364.8 315 54.6
Thhalv10011664m.g Eutrema salsugineum HOM05D007180 ORTHO05D009028 7.2e-99 364.8 309 55.3
AT1G52155 Arabidopsis thaliana HOM05D007180 ORTHO05D009028 9.4e-99 364.4 309 55.3
Cc04_g02770 Coffea canephora HOM05D007180 ORTHO05D009028 9.4e-99 364.4 332 52.4
AL1G60250 Arabidopsis lyrata HOM05D007180 ORTHO05D009028 1.6e-98 363.6 309 55.3
Rhsim12G0201900 Rhododendron simsii HOM05D007180 ORTHO05D009028 1.6e-98 363.6 331 53.5
CARHR042290 Cardamine hirsuta HOM05D007180 ORTHO05D009028 2.7e-98 362.8 306 55.6
arahy.Tifrunner.gnm1.ann1.BL3LB4 Arachis hypogaea HOM05D007180 ORTHO05D009028 3.6e-98 362.5 336 52.7
A06p02010 Brassica napus HOM05D007180 ORTHO05D009028 1.0e-97 360.9 310 55.5
BraA06t23417Z Brassica rapa HOM05D007180 ORTHO05D009028 1.0e-97 360.9 310 55.5
BolC6t35829H Brassica oleracea HOM05D007180 ORTHO05D009028 1.4e-97 360.5 310 55.5
Oeu060509.1 Olea europaea HOM05D007180 ORTHO05D009028 3.0e-97 359.4 309 56.0
Potri.001G187300 Populus trichocarpa HOM05D007180 ORTHO05D009028 3.0e-97 359.4 321 55.8
Sed0016027 Sechium edule HOM05D007180 ORTHO05D009028 3.0e-97 359.4 306 54.9
ClCG09G001780 Citrullus lanatus HOM05D007180 ORTHO05D009028 4.0e-97 359.0 342 52.3
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 4.0e-97 359.0 309 56.6
THA.LOC104817969 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 1.5e-96 357.1 313 56.5
AUR62031877 Chenopodium quinoa HOM05D007180 ORTHO05D009028 1.3e-95 354.0 309 53.1
MELO3C024267.2 Cucumis melo HOM05D007180 ORTHO05D009028 1.3e-95 354.0 294 56.8
TAR626G1393 Trochodendron aralioides HOM05D007180 ORTHO05D009028 1.7e-95 353.6 311 56.9
Aa31LG10G2730 Aethionema arabicum HOM05D007180 ORTHO05D009028 4.8e-95 352.1 320 52.5
Dinv30459 Davidia involucrata HOM05D007180 ORTHO05D009028 3.1e-94 349.4 266 61.3
C06p07400 Brassica napus HOM05D007180 ORTHO05D009028 4.1e-94 349.0 289 57.4
HanXRQChr09g0275941 Helianthus annuus HOM05D007180 ORTHO05D009028 1.0e-92 344.4 310 51.0
AUR62022171 Chenopodium quinoa HOM05D007180 ORTHO05D009028 2.2e-92 343.2 337 49.0
Solyc03g120830.3 Solanum lycopersicum HOM05D007180 ORTHO05D009028 1.9e-91 340.1 317 53.3
Lj5A56T50 Lonicera japonica HOM05D007180 ORTHO05D009028 5.5e-91 338.6 284 58.8
EL10Ac9g22108 Beta vulgaris HOM05D007180 ORTHO05D009028 1.6e-90 337.0 309 52.1
Sopen03g039650 Solanum pennellii HOM05D007180 ORTHO05D009028 1.6e-90 337.0 317 52.7
PGSC0003DMG401002538 Solanum tuberosum HOM05D007180 ORTHO05D009028 6.1e-90 335.1 317 52.7
Nitab4.5_0007758g0080 Nicotiana tabacum HOM05D007180 ORTHO05D009028 5.2e-89 332.0 319 52.4
Nitab4.5_0001315g0310 Nicotiana tabacum HOM05D007180 ORTHO05D009028 1.5e-88 330.5 309 53.1
BcaC08g43372 Brassica carinata HOM05D007180 ORTHO05D009028 9.8e-88 327.8 277 56.3
Lsat_1_v5_gn_4_100560 Lactuca sativa HOM05D007180 ORTHO05D009028 1.3e-87 327.4 310 49.4
Migut.I00923 Erythranthe guttata HOM05D007180 ORTHO05D009028 1.7e-87 327.0 310 50.0
Manes.11G035900 Manihot esculenta HOM05D007180 ORTHO05D009028 2.8e-87 326.2 321 50.5
CAN.G438.9 Capsicum annuum HOM05D007180 ORTHO05D009028 4.9e-87 325.5 317 50.8
SalBow2G0157 Salvia bowleyana HOM05D007180 ORTHO05D009028 6.3e-87 325.1 312 49.0
AagrBONN_evm.TU.Sc2ySwM_344.297 Anthoceros agrestis HOM05D007180 ORTHO05D009028 3.1e-86 322.8 320 49.7
Peaxi162Scf00038g00837 Petunia axillaris HOM05D007180 ORTHO05D009028 9.2e-86 321.2 309 51.5
Mapoly0061s0142 Marchantia polymorpha HOM05D007180 ORTHO05D009028 4.5e-85 318.9 311 48.2
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 5.6e-83 312.0 253 58.1
SEGI_07196 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 8.9e-81 304.7 307 47.2
SEGI_18381 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 8.9e-81 304.7 307 47.2
Pp3c4_2280 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.4e-78 296.6 306 46.4
CSS0022642 Camellia sinensis var. sinensis HOM05D007180 ORTHO05D009028 4.1e-78 295.8 234 59.0
Hma1.2p1_1689F.1_g297650 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 2.7e-77 293.1 235 60.0
Pp3c5_1000 Physcomitrium patens HOM05D007180 ORTHO05D009028 5.9e-77 292.0 318 45.9
Pp3c3_33050 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.0e-76 291.2 306 47.1
arahy.Tifrunner.gnm1.ann1.Z8Y5NA Arachis hypogaea HOM05D007180 ORTHO05D009028 2.3e-76 290.0 315 47.6
Pp3c12_14730 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.3e-76 290.0 307 45.3
vmacro16982 Vaccinium macrocarpon HOM05D007180 ORTHO05D009028 3.0e-76 289.7 310 47.7
Hund06649 Selenicereus undatus HOM05D007180 ORTHO05D009028 6.6e-76 288.5 331 47.4
ATR0705G160 Amborella trichopoda HOM05D007180 ORTHO05D009028 4.3e-75 285.8 259 53.7
Pp3c27_6190 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.1e-74 283.5 307 46.3
Pp3c10_19810 Physcomitrium patens HOM05D007180 ORTHO05D009028 5.8e-72 275.4 319 43.9
SGA_v2.0_scaffold5G02533 Striga asiatica HOM05D007180 ORTHO05D009028 6.0e-61 238.8 321 40.8
SMO364G0215 Selaginella moellendorffii HOM05D007180 ORTHO05D009028 1.3e-55 221.1 213 51.6
DCAR_016200 Daucus carota HOM05D007180 ORTHO05D009028 1.1e-54 218.0 309 39.8
ECA232G5021 Erigeron canadensis HOM05D000415 ORTHO05D001916 5.4e-54 215.7 220 45.5
unitig_748.g7435 Utricularia gibba HOM05D007180 ORTHO05D009028 1.3e-52 211.1 336 35.7
Cpa.g.sc109.35 Carica papaya HOM05D007180 ORTHO05D009028 5.6e-43 179.1 309 35.9
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.1e-25 121.7 139 43.2
MBI04_g27060_MAGBIO Magnolia biondii HOM05D007180 ORTHO05D009028 2.6e-24 117.1 141 47.5
FAN09G3228 Fragaria x ananassa HOM05D007180 ORTHO05D009028 1.2e-13 81.6 73 45.2


User provided reference genes

Program Settings