Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 1.5e-90 336.3 178 100.0
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 5.5e-37 158.3 145 66.2
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 1.4e-21 107.1 155 47.1
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 2.5e-21 106.3 155 45.2
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 1.2e-20 104.0 159 46.5
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 1.2e-20 104.0 166 46.4
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 2.7e-20 102.8 156 42.9
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 2.3e-19 99.8 145 48.3
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 3.0e-19 99.4 139 46.0
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 3.9e-19 99.0 148 45.9
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 1.1e-18 97.4 145 46.9
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.5e-18 97.1 152 44.1
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 2.0e-18 96.7 145 46.2
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 2.6e-18 96.3 159 43.4
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 2.6e-18 96.3 162 43.2
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 4.4e-18 95.5 142 46.5
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 5.7e-18 95.1 138 47.8
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 1.3e-17 94.0 155 41.3
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.7e-17 93.6 138 47.1
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 1.7e-17 93.6 145 44.1
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 2.8e-17 92.8 145 44.8
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 3.7e-17 92.4 142 45.1
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 3.7e-17 92.4 155 42.6
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 4.8e-17 92.0 145 44.1
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 4.8e-17 92.0 145 43.4
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 2.4e-16 89.7 144 42.4
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 4.1e-16 89.0 145 42.8
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 4.1e-16 89.0 145 42.8
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 4.1e-16 89.0 145 43.4
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 2.0e-15 86.7 156 39.7
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 2.0e-15 86.7 145 41.4
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.6e-15 86.3 152 40.1
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 3.4e-15 85.9 161 39.8
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 5.9e-15 85.1 155 39.4
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 5.9e-15 85.1 126 45.2
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 1.0e-14 84.3 152 38.8
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 1.3e-14 84.0 144 43.1
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 1.3e-14 84.0 152 40.8
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 2.2e-14 83.2 147 40.8
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 2.2e-14 83.2 141 42.6
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 5.0e-14 82.0 152 38.2
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 5.0e-14 82.0 151 41.1
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 2.5e-13 79.7 166 36.7
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 2.5e-13 79.7 138 39.9
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 3.2e-13 79.3 135 43.0
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 4.2e-13 79.0 145 42.1
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 4.2e-13 79.0 116 45.7
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 4.2e-13 79.0 152 40.1
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 9.4e-13 77.8 139 39.6
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 9.4e-13 77.8 135 41.5
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 3.6e-12 75.9 145 40.7
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 4.7e-12 75.5 142 41.5
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 6.1e-12 75.1 120 43.3
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 6.1e-12 75.1 135 39.3
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 1.0e-11 74.3 145 40.7
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 2.3e-11 73.2 133 42.1
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 2.3e-11 73.2 130 40.0
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 2.3e-11 73.2 133 39.1
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 3.0e-11 72.8 135 38.5
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 3.9e-11 72.4 142 40.8
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 3.9e-11 72.4 133 42.1
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 6.7e-11 71.6 130 40.0
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 1.1e-10 70.9 65 60.0
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 1.5e-10 70.5 152 37.5
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 1.5e-10 70.5 129 41.9
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 2.0e-10 70.1 155 38.7
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 2.6e-10 69.7 156 36.5
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.3e-10 69.3 142 40.8
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 5.7e-10 68.6 127 39.4
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 9.7e-10 67.8 66 57.6
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 9.7e-10 67.8 135 40.7
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 9.7e-10 67.8 89 46.1
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 1.7e-09 67.0 115 40.9
PRCOL_00006538 Prasinoderma coloniale HOM05D007161 ORTHO05D009103 1.7e-09 67.0 106 46.2
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 2.2e-09 66.6 135 40.7
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 2.2e-09 66.6 132 41.7
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.8e-09 66.2 117 40.2
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 3.7e-09 65.9 142 38.7
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 3.7e-09 65.9 131 38.9
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 6.3e-09 65.1 90 46.7
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 8.2e-09 64.7 142 39.4
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 1.4e-08 63.9 89 47.2
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.8e-08 63.5 124 40.3
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 2.4e-08 63.2 123 36.6
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 5.3e-08 62.0 121 38.0
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 7.0e-08 61.6 142 37.3
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 9.1e-08 61.2 137 36.5
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 9.1e-08 61.2 123 35.8
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 9.1e-08 61.2 138 38.4
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 1.2e-07 60.8 131 35.9
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 1.6e-07 60.5 138 37.7
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 2.0e-07 60.1 138 38.4
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 2.0e-07 60.1 138 38.4
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 2.0e-07 60.1 118 39.8
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 2.0e-07 60.1 138 38.4
MCO15G412 Micromonas commoda HOM05D007161 ORTHO05D009103 2.6e-07 59.7 125 37.6
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 4.5e-07 58.9 90 44.4
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 4.5e-07 58.9 137 34.3
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 5.9e-07 58.5 138 37.7
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 1.0e-06 57.8 90 43.3
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.3e-06 57.4 90 42.2
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.3e-06 57.4 118 38.1
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.2e-06 56.6 111 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 2.9e-06 56.2 118 39.0
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.9e-06 56.2 116 37.9
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 2.9e-06 56.2 129 37.2
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 2.9e-06 56.2 131 34.4
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 8.5e-06 54.7 138 34.8


User provided reference genes

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