Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 1.2e-99 367.5 350 100.0
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 3.3e-38 163.3 176 77.8
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 9.8e-14 82.0 167 37.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.4e-12 76.3 156 36.5
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.4e-12 76.3 156 36.5
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 7.0e-12 75.9 151 36.4
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.2e-12 75.5 151 36.4
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.2e-12 75.5 151 40.4
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 1.6e-11 74.7 176 33.0
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 2.0e-11 74.3 151 47.0
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.7e-11 73.9 151 39.1
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.7e-11 73.9 147 36.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 2.7e-11 73.9 147 36.1
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 4.5e-11 73.2 150 38.0
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 5.9e-11 72.8 151 35.1
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 7.8e-11 72.4 152 54.6
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.0e-10 72.0 140 40.0
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.0e-10 72.0 160 47.5
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.0e-10 72.0 147 35.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.3e-10 71.6 160 38.1
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.3e-10 71.6 152 55.9
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.7e-10 71.2 160 37.5
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.9e-10 70.5 150 42.7
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 2.9e-10 70.5 152 35.5
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.9e-10 70.5 135 56.3
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-10 70.1 135 55.6
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.9e-10 70.1 135 54.8
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.9e-10 70.1 152 57.2
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 3.9e-10 70.1 151 35.8
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 3.9e-10 70.1 151 35.8
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 5.0e-10 69.7 140 58.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 5.0e-10 69.7 135 41.5
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 6.6e-10 69.3 151 41.1
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.6e-10 69.3 144 39.6
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 6.6e-10 69.3 152 50.0
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 8.6e-10 68.9 152 57.9
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-09 68.6 135 58.5
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 1.9e-09 67.8 151 45.7
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.9e-09 67.8 148 37.2
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.9e-09 67.8 147 38.8
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.9e-09 67.8 188 39.9
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.9e-09 67.8 135 61.5
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.5e-09 67.4 144 56.2
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 3.3e-09 67.0 135 52.6
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 4.3e-09 66.6 131 53.4
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 4.3e-09 66.6 151 34.4
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 4.3e-09 66.6 135 48.1
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 4.3e-09 66.6 135 40.7
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 4.3e-09 66.6 151 36.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.3e-09 66.6 151 36.4
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 5.6e-09 66.2 135 51.1
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.6e-09 66.2 135 51.1
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 5.6e-09 66.2 135 51.1
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.6e-09 66.2 152 46.7
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 7.3e-09 65.9 137 34.3
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 7.3e-09 65.9 140 42.9
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 7.3e-09 65.9 150 62.7
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 7.3e-09 65.9 146 45.9
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 9.5e-09 65.5 150 33.3
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 9.5e-09 65.5 135 49.6
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 9.5e-09 65.5 144 46.5
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 1.2e-08 65.1 144 40.3
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 1.2e-08 65.1 170 50.0
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.2e-08 65.1 135 39.3
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 1.6e-08 64.7 147 45.6
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.6e-08 64.7 140 37.9
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 2.8e-08 63.9 151 38.4
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.8e-08 63.9 152 37.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 3.6e-08 63.5 144 34.0
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 3.6e-08 63.5 144 34.0
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 3.6e-08 63.5 135 48.1
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 3.6e-08 63.5 161 41.0
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 6.1e-08 62.8 144 37.5
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 6.1e-08 62.8 144 34.0
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 6.1e-08 62.8 189 38.1
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.0e-08 62.4 142 52.1
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 8.0e-08 62.4 142 52.1
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 8.0e-08 62.4 151 51.7
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.4e-07 61.6 144 33.3
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.4e-07 61.6 135 45.9
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.4e-07 61.6 131 32.1
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.4e-07 61.6 151 49.7
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 1.4e-07 61.6 150 37.3
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 1.8e-07 61.2 137 32.8
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 1.8e-07 61.2 151 46.4
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.8e-07 61.2 132 32.6
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 2.3e-07 60.8 135 53.3
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 2.3e-07 60.8 135 53.3
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 2.3e-07 60.8 135 53.3
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 3.1e-07 60.5 135 43.7
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 3.1e-07 60.5 137 59.9
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.1e-07 60.5 168 36.9
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 3.1e-07 60.5 135 60.0
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 4.0e-07 60.1 162 36.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 4.0e-07 60.1 137 53.3
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 4.0e-07 60.1 137 58.4
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 4.0e-07 60.1 141 32.6
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 4.0e-07 60.1 150 55.3
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 5.2e-07 59.7 135 62.2
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 5.2e-07 59.7 150 40.7
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 6.8e-07 59.3 135 40.7
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 1.2e-06 58.5 143 58.7
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 1.2e-06 58.5 135 42.2
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.2e-06 58.5 169 30.8
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.5e-06 58.2 131 32.8
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 2.0e-06 57.8 135 51.1
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 2.0e-06 57.8 135 51.1
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-06 57.8 145 35.2
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 2.0e-06 57.8 176 44.9
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.0e-06 57.8 131 31.3
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 2.0e-06 57.8 131 38.9
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 2.6e-06 57.4 152 31.6
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 3.4e-06 57.0 155 38.7
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 7.5e-06 55.8 144 37.5


User provided reference genes

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