Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0435500 Oryza sativa ssp. japonica HOM05D000527 ORTHO05D295047 6.4e-42 173.7 90 100.0
Os08g0495800 Oryza sativa ssp. japonica HOM05D000527 ORTHO05D000559 2.1e-13 79.0 42 85.7
Ciclev10007545m.g Citrus clementina HOM05D000527 ORTHO05D000559 1.7e-10 69.3 42 73.8
Zm00001eb033870 Zea mays HOM05D000527 ORTHO05D000559 3.8e-10 68.2 42 71.4
Nn1g08438 Nelumbo nucifera HOM05D000527 ORTHO05D000559 1.1e-09 66.6 42 69.0
Nn1g08445 Nelumbo nucifera HOM05D000527 ORTHO05D000559 1.4e-09 66.2 42 71.4
TAR627G0258 Trochodendron aralioides HOM05D000527 ORTHO05D000559 1.9e-09 65.9 57 54.4
ATR0751G114 Amborella trichopoda HOM05D000527 ORTHO05D000559 2.4e-09 65.5 42 69.0
Rhsim06G0234200 Rhododendron simsii HOM05D000527 ORTHO05D000559 2.4e-09 65.5 45 64.4
Manes.05G206000 Manihot esculenta HOM05D000527 ORTHO05D000559 5.4e-09 64.3 45 64.4
Sabra11G0139600 Salix brachista HOM05D000527 ORTHO05D000559 1.2e-08 63.2 57 52.6
PGR031G2187 Punica granatum HOM05D000527 ORTHO05D000559 1.6e-08 62.8 42 66.7
vmacro11631 Vaccinium macrocarpon HOM05D000527 ORTHO05D000559 2.1e-08 62.4 45 62.2
PSO541G6431 Papaver somniferum HOM05D000527 ORTHO05D000559 2.7e-08 62.0 42 66.7
CiPaw.11G209300 Carya illinoinensis HOM05D000527 ORTHO05D000559 3.5e-08 61.6 42 66.7
MD03G1040100 Malus domestica HOM05D000527 ORTHO05D000559 3.5e-08 61.6 62 54.8
Thecc.07G004100 Theobroma cacao HOM05D000527 ORTHO05D000559 3.5e-08 61.6 42 66.7
Actinidia10585 Actinidia chinensis HOM05D000527 ORTHO05D000559 4.6e-08 61.2 42 64.3
Cc05_g15530 Coffea canephora HOM05D000527 ORTHO05D000559 4.6e-08 61.2 42 66.7
COL.COLO4_07767 Corchorus olitorius HOM05D000527 ORTHO05D000559 4.6e-08 61.2 57 52.6
Potri.011G166700 Populus trichocarpa HOM05D000527 ORTHO05D000559 4.6e-08 61.2 57 52.6
GSVIVG01014778001 Vitis vinifera HOM05D000527 ORTHO05D000559 4.6e-08 61.2 42 66.7
Dinv40898 Davidia involucrata HOM05D000527 ORTHO05D000559 6.0e-08 60.8 42 64.3
PSO675G4223 Papaver somniferum HOM05D000527 ORTHO05D000559 6.0e-08 60.8 57 52.6
Eucgr.F03658 Eucalyptus grandis HOM05D000527 ORTHO05D000559 1.0e-07 60.1 42 64.3
Lj1A898G72 Lonicera japonica HOM05D000527 ORTHO05D000559 1.0e-07 60.1 42 59.5
CAN.G623.55 Capsicum annuum HOM05D000527 ORTHO05D000559 1.3e-07 59.7 42 61.9
CDE10G1042 Ceratophyllum demersum HOM05D000527 ORTHO05D000559 1.3e-07 59.7 42 61.9
MD11G1041500 Malus domestica HOM05D000527 ORTHO05D000559 1.3e-07 59.7 42 64.3
Gorai.013G149200 Gossypium raimondii HOM05D000527 ORTHO05D000559 1.7e-07 59.3 42 64.3
QL08p001413 Quercus lobata HOM05D000527 ORTHO05D000559 1.7e-07 59.3 42 64.3
Gohir.A13G130100 Gossypium hirsutum HOM05D000527 ORTHO05D000559 2.3e-07 58.9 42 64.3
Gohir.D13G133000 Gossypium hirsutum HOM05D000527 ORTHO05D000559 2.3e-07 58.9 42 64.3
Solyc07g065980.3 Solanum lycopersicum HOM05D000527 ORTHO05D000559 2.3e-07 58.9 42 61.9
PGSC0003DMG400022258 Solanum tuberosum HOM05D000527 ORTHO05D000559 2.3e-07 58.9 42 61.9
CDE10G1316 Ceratophyllum demersum HOM05D000527 ORTHO05D000559 3.0e-07 58.5 42 59.5
Duzib268G1807 Durio zibethinus HOM05D000527 ORTHO05D000559 3.0e-07 58.5 42 64.3
Sopen07g034180 Solanum pennellii HOM05D000527 ORTHO05D000559 3.0e-07 58.5 42 61.9
TWI38G1579 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 3.0e-07 58.5 42 61.9
RcHm_v2.0_Chr5g0075141 Rosa chinensis HOM05D000527 ORTHO05D000559 3.9e-07 58.2 42 61.9
ECA246G1546 Erigeron canadensis HOM05D000527 ORTHO05D000559 5.1e-07 57.8 42 57.1
FvH4_3g41930 Fragaria vesca HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 61.9
FAN11G1772 Fragaria x ananassa HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 61.9
FAN21G3173 Fragaria x ananassa HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 61.9
FAN25G2743 Fragaria x ananassa HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 61.9
Lsat_1_v5_gn_5_661 Lactuca sativa HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 57.1
Phvul.008G282600 Phaseolus vulgaris HOM05D000527 ORTHO05D000559 6.6e-07 57.4 42 59.5
SGA_v2.0_scaffold186G40240 Striga asiatica HOM05D000527 ORTHO05D000559 6.6e-07 57.4 62 43.5
CSS0006516 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 8.7e-07 57.0 42 61.9
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 8.7e-07 57.0 42 57.1
Nitab4.5_0000152g0170 Nicotiana tabacum HOM05D000527 ORTHO05D000559 8.7e-07 57.0 42 59.5
Nitab4.5_0001303g0060 Nicotiana tabacum HOM05D000527 ORTHO05D000559 8.7e-07 57.0 42 59.5
Prupe.6G032400 Prunus persica HOM05D000527 ORTHO05D000559 8.7e-07 57.0 62 51.6
Haze_09899 Corylus avellana HOM05D000527 ORTHO05D000559 1.1e-06 56.6 42 61.9
Lalb_Chr04g0247691 Lupinus albus HOM05D000527 ORTHO05D000559 1.1e-06 56.6 42 59.5
Medtr5g096820 Medicago truncatula HOM05D000527 ORTHO05D000559 1.1e-06 56.6 42 59.5
QL08p001436 Quercus lobata HOM05D000527 ORTHO05D000559 1.1e-06 56.6 42 59.5
VMungo0647G0243 Vigna mungo HOM05D000527 ORTHO05D000559 1.5e-06 56.2 42 57.1
Aa31LG10G510 Aethionema arabicum HOM05D000527 ORTHO05D000559 1.9e-06 55.8 42 54.8
LjContig00081g0002442 Lotus japonicus HOM05D000527 ORTHO05D000559 1.9e-06 55.8 42 57.1
Atru.chr2.3841 Acer truncatum HOM05D000527 ORTHO05D000559 2.5e-06 55.5 42 59.5
Carub.0001s4424 Capsella rubella HOM05D000527 ORTHO05D000559 2.5e-06 55.5 42 54.8
ClCG11G017930 Citrullus lanatus HOM05D000527 ORTHO05D000559 2.5e-06 55.5 42 59.5
CsaV3_4G033560 Cucumis sativus L. HOM05D000527 ORTHO05D000559 2.5e-06 55.5 42 59.5
Peaxi162Scf00232g00416 Petunia axillaris HOM05D000527 ORTHO05D000559 2.5e-06 55.5 42 57.1
BcaC01g01553 Brassica carinata HOM05D000527 ORTHO05D000559 3.3e-06 55.1 42 57.1
C03p93050 Brassica napus HOM05D000527 ORTHO05D000559 3.3e-06 55.1 42 57.1
BolC3t21609H Brassica oleracea HOM05D000527 ORTHO05D000559 3.3e-06 55.1 42 57.1
Migut.M01595 Erythranthe guttata HOM05D000527 ORTHO05D000559 3.3e-06 55.1 62 41.9
Hma1.2p1_0321F.1_g124190 Hydrangea macrophylla HOM05D000527 ORTHO05D000559 3.3e-06 55.1 45 53.3
MSTRG.7031 Avicennia marina HOM05D000527 ORTHO05D000559 4.3e-06 54.7 42 54.8
Cpa.g.sc1077.4 Carica papaya HOM05D000527 ORTHO05D000559 4.3e-06 54.7 42 59.5
Psat2g005600 Pisum sativum HOM05D000527 ORTHO05D000559 4.3e-06 54.7 41 61.0
Thecc.07G004800 Theobroma cacao HOM05D000527 ORTHO05D000559 4.3e-06 54.7 42 57.1
TPR.G1303 Trifolium pratense HOM05D000527 ORTHO05D000559 4.3e-06 54.7 42 57.1
HPP92_022816 Vanilla planifolia HOM05D000527 ORTHO05D000559 4.3e-06 54.7 42 59.5
MELO3C025599.2 Cucumis melo HOM05D000527 ORTHO05D000559 5.6e-06 54.3 42 57.1
HanXRQChr05g0160181 Helianthus annuus HOM05D000527 ORTHO05D000559 5.6e-06 54.3 42 54.8
Oeu019691.1 Olea europaea HOM05D000527 ORTHO05D000559 7.3e-06 53.9 42 54.8
arahy.Tifrunner.gnm1.ann1.805HV8 Arachis hypogaea HOM05D000527 ORTHO05D000559 9.6e-06 53.5 42 57.1
arahy.Tifrunner.gnm1.ann1.C3FF4U Arachis hypogaea HOM05D000527 ORTHO05D000559 9.6e-06 53.5 42 57.1
CARHR045400 Cardamine hirsuta HOM05D000527 ORTHO05D000559 9.6e-06 53.5 42 54.8
Glyma.14G010500 Glycine max HOM05D000527 ORTHO05D000559 9.6e-06 53.5 42 57.1
Oeu006275.1 Olea europaea HOM05D000527 ORTHO05D000559 9.6e-06 53.5 42 52.4


User provided reference genes

Program Settings