Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-123 446.4 222 100.0
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-49 200.7 166 58.4
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-49 200.7 166 58.4
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.9e-49 198.4 166 60.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.0e-48 196.1 184 56.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.0e-48 196.1 166 59.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.0e-48 195.3 169 58.0
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 6.6e-48 194.9 166 59.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-47 193.7 165 57.6
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.5e-47 193.0 159 61.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.6e-47 191.8 166 59.0
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 9.5e-47 191.0 165 58.2
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.1e-46 189.9 166 58.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.1e-46 189.9 168 57.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.8e-46 189.5 168 57.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.8e-46 189.5 164 60.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.6e-46 189.1 164 57.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.6e-46 189.1 167 58.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 4.7e-46 188.7 166 57.2
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 8.0e-46 188.0 167 58.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 8.0e-46 188.0 159 60.4
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.0e-46 188.0 159 60.4
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-45 187.6 159 59.7
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.0e-45 187.6 168 55.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.4e-45 187.2 166 57.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.4e-45 187.2 159 59.1
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.4e-45 187.2 164 57.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.3e-45 186.4 170 57.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.3e-45 186.4 157 58.0
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.1e-45 186.0 158 58.2
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.1e-45 186.0 166 58.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.0e-45 185.7 164 57.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.2e-45 185.3 163 58.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.2e-45 185.3 159 60.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.2e-45 185.3 164 57.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.2e-45 185.3 161 59.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 6.8e-45 184.9 167 54.5
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.8e-45 184.9 168 56.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.8e-45 184.9 159 58.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.8e-45 184.9 164 57.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 6.8e-45 184.9 164 57.9
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 6.8e-45 184.9 172 54.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 8.9e-45 184.5 166 56.6
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.9e-45 184.5 159 58.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.9e-45 184.5 162 56.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-44 184.1 162 56.2
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-44 184.1 164 57.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-44 184.1 164 56.7
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-44 184.1 159 58.5
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.2e-44 184.1 168 55.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.5e-44 183.7 159 57.9
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-44 183.3 167 56.3
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.0e-44 183.3 167 55.1
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.6e-44 183.0 159 57.9
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.6e-44 183.0 165 56.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.6e-44 183.0 159 56.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.6e-44 183.0 159 57.9
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.6e-44 183.0 164 57.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 3.4e-44 182.6 164 55.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.4e-44 182.6 164 58.5
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 4.4e-44 182.2 164 56.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 5.8e-44 181.8 164 57.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.8e-44 181.8 153 59.5
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 7.5e-44 181.4 164 56.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.5e-44 181.4 163 55.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.8e-44 181.0 164 57.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.8e-44 181.0 164 57.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 9.8e-44 181.0 159 57.2
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 9.8e-44 181.0 166 56.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.3e-43 180.6 164 56.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.7e-43 180.3 162 54.9
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.7e-43 180.3 159 56.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.2e-43 179.9 159 57.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.2e-43 179.9 180 52.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.9e-43 179.5 159 55.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.9e-43 179.5 165 58.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-43 179.5 165 58.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.9e-43 179.5 163 55.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.7e-43 179.1 166 54.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 4.9e-43 178.7 159 54.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 4.9e-43 178.7 159 54.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 4.9e-43 178.7 161 57.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.9e-43 178.7 172 52.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.9e-43 178.7 164 54.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 6.4e-43 178.3 166 56.6
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.4e-43 178.3 159 57.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.4e-43 178.3 163 54.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.4e-43 178.3 177 50.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 8.3e-43 177.9 161 56.5
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.3e-43 177.9 161 55.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 8.3e-43 177.9 164 55.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.1e-42 177.6 159 56.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-42 177.6 165 58.2
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-42 177.6 162 56.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.4e-42 177.2 164 53.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.9e-42 176.8 159 54.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.9e-42 176.8 159 54.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.9e-42 176.8 163 54.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.4e-42 176.4 159 54.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.4e-42 176.4 164 53.7
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.2e-42 176.0 163 53.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 3.2e-42 176.0 165 54.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.1e-42 175.6 159 56.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.1e-42 175.6 165 53.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.1e-42 175.6 165 53.9
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 4.1e-42 175.6 162 53.1
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 5.4e-42 175.3 159 54.7
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.4e-42 175.3 165 57.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.4e-42 175.3 163 54.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 5.4e-42 175.3 163 55.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 5.4e-42 175.3 174 52.9
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 7.0e-42 174.9 175 48.6
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.0e-42 174.9 167 53.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 7.0e-42 174.9 163 54.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 9.2e-42 174.5 160 57.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.2e-41 174.1 160 54.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.2e-41 174.1 193 50.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.2e-41 174.1 159 56.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-41 173.3 161 53.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-41 173.3 163 54.6
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.7e-41 172.9 157 54.8
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.7e-41 172.9 164 54.9
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 3.5e-41 172.6 174 51.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.5e-41 172.6 161 54.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.5e-41 172.6 171 55.0
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.6e-41 172.2 159 53.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.0e-41 171.8 159 53.5
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 6.0e-41 171.8 156 55.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 6.0e-41 171.8 160 56.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.3e-40 169.9 167 50.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.0e-40 169.5 159 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.9e-40 169.1 158 53.2
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.9e-40 169.1 164 51.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.0e-40 168.7 171 52.0
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-39 166.0 179 53.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.3e-39 165.6 168 53.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.3e-39 165.6 165 53.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 4.3e-39 165.6 171 50.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.6e-39 165.2 170 49.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.8e-37 160.2 129 62.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-37 160.2 163 51.5
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.8e-37 158.3 168 48.8
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.4e-36 156.0 153 49.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.4e-36 155.6 159 50.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.8e-36 155.2 164 51.8
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.2e-35 153.3 126 61.9
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 8.3e-35 151.4 164 48.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.1e-34 151.0 129 58.1
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 7.1e-34 148.3 164 47.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-31 140.6 126 56.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 9.5e-31 137.9 165 45.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.8e-29 131.7 134 50.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.9e-29 131.3 155 45.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.8e-28 128.6 126 56.3
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.3e-27 127.5 121 52.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.8e-27 125.9 120 51.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.8e-27 125.9 136 50.7
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.1e-26 124.4 167 45.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.2e-26 121.3 104 59.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.7e-24 117.1 150 42.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.8e-22 109.8 91 62.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.1e-22 108.2 176 35.8
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-21 107.1 98 61.2
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.0e-21 105.9 174 37.4
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-20 104.4 198 34.3
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.0e-20 103.6 91 58.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-19 100.9 174 35.6
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 8.4e-19 98.2 94 52.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.3e-16 90.1 72 55.6
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 3.6e-14 82.8 92 46.7
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 3.4e-12 76.3 161 31.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.4e-10 70.9 93 40.9
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.6e-09 65.9 177 30.5
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 7.9e-09 65.1 176 31.2
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 7.9e-09 65.1 180 28.9


User provided reference genes

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