Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0427500 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 8.8e-128 460.3 233 100.0
Zm00001eb024970 Zea mays HOM05D007295 ORTHO05D007705 8.2e-49 198.0 200 55.5
Zm00001eb063180 Zea mays HOM05D007295 ORTHO05D007705 9.3e-45 184.5 154 61.7
Zm00001eb273910 Zea mays HOM05D007295 ORTHO05D007705 9.3e-45 184.5 154 61.7
Zm00001eb010720 Zea mays HOM05D007295 ORTHO05D007705 1.2e-44 184.1 154 61.7
Zm00001eb086670 Zea mays HOM05D007295 ORTHO05D007705 1.2e-44 184.1 154 61.7
Zm00001eb367280 Zea mays HOM05D007295 ORTHO05D007705 1.2e-44 184.1 154 61.7
Zm00001eb401020 Zea mays HOM05D007295 ORTHO05D007705 1.2e-44 184.1 154 61.7
Zm00001eb171470 Zea mays HOM05D007295 ORTHO05D007705 2.7e-44 183.0 154 61.0
Zm00001eb237400 Zea mays HOM05D007295 ORTHO05D007705 2.7e-44 183.0 154 61.0
Zm00001eb048300 Zea mays HOM05D007295 ORTHO05D007705 6.7e-43 178.3 154 60.4
Zm00001eb133080 Zea mays HOM05D007295 ORTHO05D007705 1.5e-39 167.2 171 55.0
Zm00001eb392180 Zea mays HOM05D007295 ORTHO05D007705 1.9e-37 160.2 114 69.3
Zm00001eb412060 Zea mays HOM05D007295 ORTHO05D007705 8.5e-30 134.8 171 46.2
Zm00001eb086590 Zea mays HOM05D007295 ORTHO05D007705 2.5e-29 133.3 160 44.4
Os02g0813200 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 4.2e-29 132.5 154 46.1
Zm00001eb211670 Zea mays HOM05D007295 ORTHO05D007705 9.4e-29 131.3 152 44.7
Zm00001eb197800 Zea mays HOM05D007295 ORTHO05D007705 2.1e-28 130.2 152 44.7
Os06g0595700 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.1e-27 125.6 154 44.8
Zm00001eb117650 Zea mays HOM05D007295 ORTHO05D007705 8.8e-27 124.8 118 57.6
Os09g0292300 Oryza sativa ssp. japonica HOM05D000034 ORTHO05D007705 2.6e-26 123.2 140 46.4
Zm00001eb018820 Zea mays HOM05D007295 ORTHO05D007705 7.4e-26 121.7 142 45.8
Zm00001eb015410 Zea mays HOM05D007295 ORTHO05D007705 2.8e-25 119.8 153 44.4
Zm00001eb270430 Zea mays HOM05D007295 ORTHO05D007705 4.8e-25 119.0 158 44.9
Zm00001eb046270 Zea mays HOM05D007295 ORTHO05D007705 8.2e-25 118.2 122 47.5
Zm00001eb087940 Zea mays HOM05D007295 ORTHO05D007705 8.2e-25 118.2 131 46.6
Zm00001eb242210 Zea mays HOM05D007295 ORTHO05D007705 8.2e-25 118.2 122 47.5
Zm00001eb389250 Zea mays HOM05D007295 ORTHO05D007705 8.2e-25 118.2 122 47.5
Zm00001eb279690 Zea mays HOM05D007295 ORTHO05D007705 1.8e-24 117.1 152 41.4
Zm00001eb090610 Zea mays HOM05D007295 ORTHO05D007705 2.4e-24 116.7 131 45.8
Zm00001eb113300 Zea mays HOM05D007295 ORTHO05D007705 6.9e-24 115.2 153 43.8
Zm00001eb019020 Zea mays HOM05D007295 ORTHO05D007705 1.3e-22 110.9 122 46.7
Os05g0218001 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.8e-22 109.4 152 40.1
Zm00001eb004080 Zea mays HOM05D007295 ORTHO05D007705 3.6e-20 102.8 91 49.5
Zm00001eb345220 Zea mays HOM05D007295 ORTHO05D007705 4.7e-20 102.4 91 49.5
Os05g0498800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 6.1e-20 102.1 174 39.7
Os12g0299650 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 6.1e-20 102.1 100 46.0
Os06g0481800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.4e-19 100.9 100 45.0
Os01g0894050 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.9e-19 99.4 100 45.0
Os04g0422950 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.7e-17 94.0 97 45.4
Zm00001eb379810 Zea mays HOM05D007295 ORTHO05D007705 4.8e-17 92.4 63 69.8
Zm00001eb300210 Zea mays HOM05D007295 ORTHO05D007705 6.3e-17 92.0 91 47.3
Zm00001eb136070 Zea mays HOM05D007295 ORTHO05D007705 1.4e-16 90.9 74 54.1
Zm00001eb384140 Zea mays HOM05D007295 ORTHO05D007705 1.2e-15 87.8 74 51.4
Zm00001eb385640 Zea mays HOM05D007295 ORTHO05D007705 2.6e-15 86.7 98 43.9
Zm00001eb121750 Zea mays HOM05D007295 ORTHO05D007705 4.5e-15 85.9 98 40.8
Zm00001eb424390 Zea mays HOM05D007295 ORTHO05D007705 7.7e-15 85.1 98 39.8
Zm00001eb045190 Zea mays HOM05D007295 ORTHO05D007705 1.0e-14 84.7 98 43.9
Zm00001eb035520 Zea mays HOM05D011105 ORTHO05D007705 2.2e-14 83.6 99 37.4
Zm00001eb090020 Zea mays HOM05D007295 ORTHO05D007705 2.9e-14 83.2 99 37.4
Zm00001eb180120 Zea mays HOM05D007295 ORTHO05D007705 2.9e-14 83.2 99 37.4
Os04g0463600 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.0e-14 82.4 98 38.8
Zm00001eb386100 Zea mays HOM05D007295 ORTHO05D007705 3.2e-13 79.7 103 38.8
Zm00001eb020010 Zea mays HOM05D007295 ORTHO05D007705 7.2e-13 78.6 99 37.4
Zm00001eb196690 Zea mays HOM05D007295 ORTHO05D007705 4.7e-12 75.9 149 30.2
Zm00001eb236750 Zea mays HOM05D007295 ORTHO05D007705 8.0e-12 75.1 97 38.1
Zm00001eb338830 Zea mays HOM05D007295 ORTHO05D007705 1.0e-11 74.7 97 38.1
Zm00001eb136260 Zea mays HOM05D007295 ORTHO05D007705 2.3e-11 73.6 104 38.5
Zm00001eb274350 Zea mays HOM05D007295 ORTHO05D007705 3.0e-11 73.2 97 37.1
Zm00001eb309640 Zea mays HOM05D007295 ORTHO05D007705 3.0e-11 73.2 62 58.1
Zm00001eb373830 Zea mays HOM05D007295 ORTHO05D007705 3.0e-11 73.2 97 37.1
Zm00001eb375080 Zea mays HOM05D007295 ORTHO05D007705 5.2e-11 72.4 97 37.1
Zm00001eb093810 Zea mays HOM05D007295 ORTHO05D007705 1.3e-09 67.8 96 36.5
Zm00001eb001660 Zea mays HOM05D007295 ORTHO05D007705 2.8e-09 66.6 96 36.5
FAN15G1296 Fragaria x ananassa HOM05D000665 ORTHO05D003147 1.1e-08 64.7 102 31.4
FAN27G2099 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.1e-08 64.7 107 30.8
Os03g0643100 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.1e-08 64.7 196 27.0
Os07g0210800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.1e-08 64.7 196 27.0
Os09g0122200 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.1e-08 64.7 196 27.0
Os10g0468301 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.1e-08 64.7 196 27.0
FvH4_2g38660 Fragaria vesca HOM05D000665 ORTHO05D000140 1.8e-08 63.9 107 30.8
Os07g0115800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 2.4e-08 63.5 196 27.0
RcHm_v2.0_Chr6g0302651 Rosa chinensis HOM05D000665 ORTHO05D000140 7.0e-08 62.0 119 27.7
Nn5g30764 Nelumbo nucifera HOM05D000665 ORTHO05D003147 5.9e-07 58.9 106 30.2
Prupe.1G367300 Prunus persica HOM05D000665 ORTHO05D003147 1.3e-06 57.8 95 31.6
TAR381G0952 Trochodendron aralioides HOM05D000665 ORTHO05D003147 1.7e-06 57.4 101 30.7
TWI12G0661 Tripterygium wilfordii HOM05D000665 ORTHO05D003147 2.2e-06 57.0 99 32.3
ATR0585G101 Amborella trichopoda HOM05D000665 ORTHO05D000140 2.9e-06 56.6 98 31.6
Zm00001eb056170 Zea mays HOM05D007295 ORTHO05D007705 2.9e-06 56.6 154 30.5
Zm00001eb390800 Zea mays HOM05D007295 ORTHO05D007705 2.9e-06 56.6 152 30.3
Zm00001eb236790 Zea mays HOM05D007295 ORTHO05D007705 6.5e-06 55.5 32 71.9
Zm00001eb331910 Zea mays HOM05D007295 ORTHO05D007705 6.5e-06 55.5 32 71.9
Zm00001eb391340 Zea mays HOM05D007295 ORTHO05D007705 6.5e-06 55.5 152 30.3


User provided reference genes

Program Settings