Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0426400 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 2.6e-46 188.3 94 100.0
Os11g0428800 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 3.0e-18 95.1 63 73.0
PSO832G3906 Papaver somniferum HOM05D000098 ORTHO05D001079 1.1e-12 76.6 59 57.6
TAR362G0573 Trochodendron aralioides HOM05D000098 ORTHO05D001079 2.3e-10 68.9 64 50.0
PSO764G0297 Papaver somniferum HOM05D000098 ORTHO05D001079 3.0e-10 68.6 63 52.4
PSO832G2510 Papaver somniferum HOM05D000098 ORTHO05D001079 3.0e-10 68.6 63 52.4
PSO541G3751 Papaver somniferum HOM05D000098 ORTHO05D001079 6.7e-10 67.4 63 50.8
ATR0736G057 Amborella trichopoda HOM05D000098 ORTHO05D001079 2.0e-09 65.9 63 52.4
PSO675G8997 Papaver somniferum HOM05D000098 ORTHO05D001079 3.3e-09 65.1 63 49.2
PSO675G6732 Papaver somniferum HOM05D000098 ORTHO05D001079 4.3e-09 64.7 63 49.2
PSO170G0524 Papaver somniferum HOM05D000098 ORTHO05D001079 5.7e-09 64.3 78 43.6
PSO063G5016 Papaver somniferum HOM05D000098 ORTHO05D001079 7.4e-09 63.9 78 42.3
PSO541G3811 Papaver somniferum HOM05D000098 ORTHO05D001079 7.4e-09 63.9 63 49.2
Zm00001eb216460 Zea mays HOM05D000098 ORTHO05D001079 1.7e-08 62.8 62 51.6
Zm00001eb054730 Zea mays HOM05D000098 ORTHO05D001079 2.2e-08 62.4 62 50.0
Zm00001eb054710 Zea mays HOM05D000098 ORTHO05D001079 2.8e-08 62.0 59 52.5
THA.LOC104820032 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 3.7e-08 61.6 62 43.5
PSO063G3322 Papaver somniferum HOM05D000098 ORTHO05D001079 4.8e-08 61.2 63 44.4
Os06g0266400 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 6.3e-08 60.8 59 47.5
CSS0001571 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 8.2e-08 60.5 63 47.6
Nitab4.5_0025961g0020 Nicotiana tabacum HOM05D000098 ORTHO05D001079 8.2e-08 60.5 63 46.0
SEGI_10198 Sequoiadendron giganteum HOM05D000098 ORTHO05D001079 1.1e-07 60.1 60 48.3
HPP92_016582 Vanilla planifolia HOM05D000098 ORTHO05D001079 1.1e-07 60.1 60 50.0
ECA236G1230 Erigeron canadensis HOM05D000098 ORTHO05D001079 1.4e-07 59.7 66 42.4
ATR0564G019 Amborella trichopoda HOM05D000098 ORTHO05D001079 1.8e-07 59.3 59 45.8
MD05G1176800 Malus domestica HOM05D000098 ORTHO05D001079 1.8e-07 59.3 62 48.4
Os03g0709300 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 1.8e-07 59.3 59 49.2
CSS0002254 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.4e-07 58.9 63 46.0
CSS0013077 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 3.1e-07 58.5 63 46.0
CSS0039195 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 3.1e-07 58.5 63 46.0
MBI02_g10703_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 3.1e-07 58.5 60 50.0
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 3.1e-07 58.5 58 51.7
Sopen01g046840 Solanum pennellii HOM05D000098 ORTHO05D001079 3.1e-07 58.5 79 43.0
Migut.B00672 Erythranthe guttata HOM05D000098 ORTHO05D001079 4.1e-07 58.2 64 48.4
Migut.B00674 Erythranthe guttata HOM05D000098 ORTHO05D001079 4.1e-07 58.2 64 48.4
CDE05G0335 Ceratophyllum demersum HOM05D000098 ORTHO05D001079 5.3e-07 57.8 60 45.0
Lalb_Chr08g0240861 Lupinus albus HOM05D000098 ORTHO05D001079 5.3e-07 57.8 59 47.5
THA.LOC104820480 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 5.3e-07 57.8 60 48.3
Zm00001eb418270 Zea mays HOM05D000098 ORTHO05D001079 5.3e-07 57.8 55 47.3
CSS0036376 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 6.9e-07 57.4 59 47.5
Ciclev10022827m.g Citrus clementina HOM05D000098 ORTHO05D001079 6.9e-07 57.4 64 43.8
Migut.B00670 Erythranthe guttata HOM05D000098 ORTHO05D001079 6.9e-07 57.4 62 46.8
Nitab4.5_0003819g0020 Nicotiana tabacum HOM05D000098 ORTHO05D001079 6.9e-07 57.4 63 46.0
PGR042G2105 Punica granatum HOM05D000098 ORTHO05D001079 6.9e-07 57.4 59 47.5
SGA_v2.0_scaffold110G31295 Striga asiatica HOM05D000098 ORTHO05D001079 6.9e-07 57.4 64 46.9
Zm00001eb423780 Zea mays HOM05D000098 ORTHO05D001079 6.9e-07 57.4 59 44.1
Aqoxy6G00708 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 9.1e-07 57.0 64 45.3
CSS0004169 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 9.1e-07 57.0 62 45.2
Ca_16641_v3 Cicer arietinum L. HOM05D000098 ORTHO05D001079 9.1e-07 57.0 61 45.9
HanXRQChr00c0095g0571661 Helianthus annuus HOM05D000098 ORTHO05D001079 9.1e-07 57.0 63 49.2
HanXRQChr11g0340371 Helianthus annuus HOM05D000098 ORTHO05D001079 9.1e-07 57.0 63 49.2
Peaxi162Scf00011g00016 Petunia axillaris HOM05D000098 ORTHO05D001079 9.1e-07 57.0 64 45.3
Hund26754 Selenicereus undatus HOM05D006798 ORTHO05D001079 9.1e-07 57.0 60 48.3
TPR.G24754 Trifolium pratense HOM05D000098 ORTHO05D001079 9.1e-07 57.0 60 45.0
Zm00001eb061740 Zea mays HOM05D000098 ORTHO05D001077 9.1e-07 57.0 64 46.9
Zm00001eb212510 Zea mays HOM05D000098 ORTHO05D001077 9.1e-07 57.0 64 45.3
Ah.05g167480 Amaranthus hybridus HOM05D000098 ORTHO05D001079 1.2e-06 56.6 59 45.8
EL10Ac2g02843 Beta vulgaris HOM05D014602 ORTHO05D000523 1.2e-06 56.6 60 48.3
MELO3C008424.2 Cucumis melo HOM05D000098 ORTHO05D001079 1.2e-06 56.6 62 46.8
Lj2A644T11 Lonicera japonica HOM05D000098 ORTHO05D001079 1.2e-06 56.6 62 46.8
AUR62014207 Chenopodium quinoa HOM05D000098 ORTHO05D000523 1.5e-06 56.2 61 45.9
FAN13G2786 Fragaria x ananassa HOM05D000098 ORTHO05D001079 1.5e-06 56.2 60 43.3
Gohir.A01G177600 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.5e-06 56.2 60 46.7
Gohir.D01G168500 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.5e-06 56.2 60 46.7
Gorai.002G209100 Gossypium raimondii HOM05D000098 ORTHO05D001079 1.5e-06 56.2 60 46.7
Lsat_1_v5_gn_7_77861 Lactuca sativa HOM05D000098 ORTHO05D001079 1.5e-06 56.2 63 44.4
Nitab4.5_0003819g0010 Nicotiana tabacum HOM05D000098 ORTHO05D001079 1.5e-06 56.2 64 45.3
Sed0007016 Sechium edule HOM05D000098 ORTHO05D001079 1.5e-06 56.2 83 37.3
Solyc01g104390.2 Solanum lycopersicum HOM05D000098 ORTHO05D001079 1.5e-06 56.2 64 45.3
Solyc01g104400.3 Solanum lycopersicum HOM05D000098 ORTHO05D001079 1.5e-06 56.2 62 46.8
TPR.G33045 Trifolium pratense HOM05D000098 ORTHO05D001079 1.5e-06 56.2 59 42.4
unitig_578.g16187 Utricularia gibba HOM05D000098 ORTHO05D000523 1.5e-06 56.2 61 49.2
HPP92_009440 Vanilla planifolia HOM05D000098 ORTHO05D001079 1.5e-06 56.2 62 41.9
VMungo1309G3160 Vigna mungo HOM05D000098 ORTHO05D001079 1.5e-06 56.2 59 45.8
CSS0015557 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.0e-06 55.8 61 49.2
CSS0023141 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.0e-06 55.8 61 49.2
CSS0035356 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.0e-06 55.8 59 45.8
CSS0036152 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 2.0e-06 55.8 59 45.8
AUR62041223 Chenopodium quinoa HOM05D000098 ORTHO05D000523 2.0e-06 55.8 59 44.1
FvH4_5g30150 Fragaria vesca HOM05D000098 ORTHO05D001079 2.0e-06 55.8 60 43.3
FAN18G0920 Fragaria x ananassa HOM05D000098 ORTHO05D001079 2.0e-06 55.8 60 43.3
Gohir.A09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.0e-06 55.8 61 44.3
Gohir.D09G085900 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.0e-06 55.8 61 44.3
Gorai.006G102000 Gossypium raimondii HOM05D000098 ORTHO05D001079 2.0e-06 55.8 61 44.3
MD15G1418100 Malus domestica HOM05D000098 ORTHO05D001079 2.0e-06 55.8 62 43.5
Nitab4.5_0011920g0010 Nicotiana tabacum HOM05D000098 ORTHO05D001079 2.0e-06 55.8 66 43.9
Oeu000194.1 Olea europaea HOM05D000098 ORTHO05D001079 2.0e-06 55.8 62 41.9
Os03g0850900 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 2.0e-06 55.8 62 43.5
ATR0564G138 Amborella trichopoda HOM05D000098 ORTHO05D001079 2.6e-06 55.5 59 44.1
A09p42300 Brassica napus HOM05D000098 ORTHO05D000523 2.6e-06 55.5 58 48.3
BraA09t39711Z Brassica rapa HOM05D000098 ORTHO05D000523 2.6e-06 55.5 58 48.3
CANSAT11G1299 Cannabis sativa HOM05D000098 ORTHO05D001079 2.6e-06 55.5 61 45.9
ClCG08G006340 Citrullus lanatus HOM05D000098 ORTHO05D001079 2.6e-06 55.5 60 46.7
Gohir.A02G068204 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.6e-06 55.5 62 45.2
Gohir.D02G074600 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.6e-06 55.5 62 45.2
Gorai.005G084000 Gossypium raimondii HOM05D000098 ORTHO05D001079 2.6e-06 55.5 62 45.2
MBI06_g03319_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 2.6e-06 55.5 64 42.2
Os03g0807500 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001077 2.6e-06 55.5 60 46.7
Prupe.1G562300 Prunus persica HOM05D000098 ORTHO05D001079 2.6e-06 55.5 64 40.6
SEGI_29153 Sequoiadendron giganteum HOM05D000098 ORTHO05D001079 2.6e-06 55.5 61 42.6
TPR.G15152 Trifolium pratense HOM05D000098 ORTHO05D001079 2.6e-06 55.5 62 43.5
arahy.Tifrunner.gnm1.ann1.SHB49X Arachis hypogaea HOM05D000098 ORTHO05D001079 3.4e-06 55.1 62 43.5
BcaC05g26174 Brassica carinata HOM05D000098 ORTHO05D000523 3.4e-06 55.1 58 48.3
C05p21580 Brassica napus HOM05D000098 ORTHO05D000523 3.4e-06 55.1 58 48.3
BolC5t30853H Brassica oleracea HOM05D000098 ORTHO05D000523 3.4e-06 55.1 58 48.3
CAN.G1305.36 Capsicum annuum HOM05D000098 ORTHO05D001079 3.4e-06 55.1 63 42.9
CAN.G1305.37 Capsicum annuum HOM05D000098 ORTHO05D001079 3.4e-06 55.1 64 46.9
ClCG05G009780 Citrullus lanatus HOM05D000098 ORTHO05D001079 3.4e-06 55.1 61 42.6
FAN13G0650 Fragaria x ananassa HOM05D000098 ORTHO05D001079 3.4e-06 55.1 60 46.7
Medtr3g089035 Medicago truncatula HOM05D000098 ORTHO05D001079 3.4e-06 55.1 59 44.1
SEGI_39016 Sequoiadendron giganteum HOM05D000098 ORTHO05D001079 3.4e-06 55.1 59 45.8
Sopen01g046830 Solanum pennellii HOM05D000098 ORTHO05D001079 3.4e-06 55.1 64 45.3
GSVIVG01023002001 Vitis vinifera HOM05D000098 ORTHO05D001079 3.4e-06 55.1 61 44.3
arahy.Tifrunner.gnm1.ann1.6U6MGC Arachis hypogaea HOM05D000098 ORTHO05D001079 4.5e-06 54.7 64 40.6
BcaC03g17172 Brassica carinata HOM05D000098 ORTHO05D001079 4.5e-06 54.7 60 43.3
A02p33140 Brassica napus HOM05D000098 ORTHO05D001079 4.5e-06 54.7 60 43.3
C02p50950 Brassica napus HOM05D000098 ORTHO05D001079 4.5e-06 54.7 60 43.3
BolC2t11186H Brassica oleracea HOM05D000098 ORTHO05D001079 4.5e-06 54.7 60 43.3
BraA02t08337Z Brassica rapa HOM05D000098 ORTHO05D001079 4.5e-06 54.7 60 43.3
CARHR145280 Cardamine hirsuta HOM05D000098 ORTHO05D001079 4.5e-06 54.7 59 44.1
Migut.B00676 Erythranthe guttata HOM05D000098 ORTHO05D001079 4.5e-06 54.7 58 46.6
HanXRQChr11g0340541 Helianthus annuus HOM05D000098 ORTHO05D001079 4.5e-06 54.7 63 42.9
MD08G1224900 Malus domestica HOM05D000098 ORTHO05D001079 4.5e-06 54.7 62 41.9
Os02g0731400 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 4.5e-06 54.7 62 48.4
PSO017G0078 Papaver somniferum HOM05D000098 ORTHO05D001079 4.5e-06 54.7 59 45.8
Peaxi162Scf00915g00110 Petunia axillaris HOM05D000098 ORTHO05D001079 4.5e-06 54.7 61 44.3
Psat5g050400 Pisum sativum HOM05D000098 ORTHO05D000523 4.5e-06 54.7 60 46.7
SalBow5G3549 Salvia bowleyana HOM05D000098 ORTHO05D001079 4.5e-06 54.7 64 42.2
Hund09267 Selenicereus undatus HOM05D000098 ORTHO05D000546 4.5e-06 54.7 62 48.4
GSVIVG01028654001 Vitis vinifera HOM05D000098 ORTHO05D001079 4.5e-06 54.7 61 47.5
arahy.Tifrunner.gnm1.ann1.3J9I9S Arachis hypogaea HOM05D000098 ORTHO05D001079 5.9e-06 54.3 64 40.6
CDE06G1914 Ceratophyllum demersum HOM05D044142 ORTHO05D000523 5.9e-06 54.3 60 45.0
AUR62026803 Chenopodium quinoa HOM05D000098 ORTHO05D001079 5.9e-06 54.3 58 44.8
Dinv25788 Davidia involucrata HOM05D000098 ORTHO05D001079 5.9e-06 54.3 60 46.7
Glyma.05G169900 Glycine max HOM05D000098 ORTHO05D001079 5.9e-06 54.3 81 42.0
PSO541G5979 Papaver somniferum HOM05D000098 ORTHO05D000523 5.9e-06 54.3 60 41.7
THA.LOC104809724 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 5.9e-06 54.3 61 44.3
HPP92_011208 Vanilla planifolia HOM05D000098 ORTHO05D000523 5.9e-06 54.3 60 48.3
arahy.Tifrunner.gnm1.ann1.TZW06C Arachis hypogaea HOM05D000098 ORTHO05D001079 7.7e-06 53.9 59 47.5
arahy.Tifrunner.gnm1.ann1.XVX6ST Arachis hypogaea HOM05D000098 ORTHO05D001079 7.7e-06 53.9 62 41.9
BcaB07g32258 Brassica carinata HOM05D000098 ORTHO05D000523 7.7e-06 53.9 58 46.6
BcaC06g31213 Brassica carinata HOM05D000098 ORTHO05D001079 7.7e-06 53.9 60 41.7
Cfa002563 Carpinus fangiana HOM05D000098 ORTHO05D001079 7.7e-06 53.9 61 44.3
Ca_17817_v3 Cicer arietinum L. HOM05D000098 ORTHO05D001079 7.7e-06 53.9 61 45.9
Glyma.04G242300 Glycine max HOM05D000098 ORTHO05D001079 7.7e-06 53.9 59 44.1
Glyma.06G121100 Glycine max HOM05D000098 ORTHO05D001079 7.7e-06 53.9 59 44.1
Glyma.08G128100 Glycine max HOM05D000098 ORTHO05D001079 7.7e-06 53.9 61 45.9
Lsat_1_v5_gn_1_9501 Lactuca sativa HOM05D000098 ORTHO05D001079 7.7e-06 53.9 60 43.3
Lj5P247T14 Lonicera japonica HOM05D000098 ORTHO05D001079 7.7e-06 53.9 60 48.3
Lj4g0002240 Lotus japonicus HOM05D000098 ORTHO05D001079 7.7e-06 53.9 62 43.5
PSO675G5552 Papaver somniferum HOM05D000098 ORTHO05D000523 7.7e-06 53.9 60 41.7
PGSC0003DMG400023782 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.7e-06 53.9 64 45.3
PGSC0003DMG400023783 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.7e-06 53.9 64 45.3
PGSC0003DMG400023784 Solanum tuberosum HOM05D000098 ORTHO05D001079 7.7e-06 53.9 64 45.3


User provided reference genes

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