Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 5.5e-201 704.1 364 100.0
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 8.6e-154 547.4 335 84.5
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.1e-116 424.1 285 74.4
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 5.4e-116 421.8 285 73.3
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 7.1e-116 421.4 286 73.1
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 7.1e-116 421.4 285 73.7
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 7.1e-116 421.4 352 64.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 1.2e-115 420.6 285 73.7
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 1.2e-115 420.6 299 69.6
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 2.7e-115 419.5 289 73.0
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 3.5e-115 419.1 285 74.0
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 6.0e-115 418.3 291 72.2
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.0e-114 417.5 285 73.0
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.3e-114 417.2 285 73.3
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 2.3e-114 416.4 294 72.4
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 2.3e-114 416.4 290 73.1
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 3.0e-114 416.0 287 72.8
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.9e-114 415.6 285 71.9
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 8.7e-114 414.5 285 73.0
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.9e-113 413.3 290 72.1
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.3e-113 412.5 288 70.5
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.3e-113 412.5 288 70.5
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 3.3e-113 412.5 317 67.8
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 4.3e-113 412.1 285 72.3
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 4.3e-113 412.1 285 72.3
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 5.6e-113 411.8 294 71.1
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 9.6e-113 411.0 285 71.6
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 9.6e-113 411.0 285 71.9
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 9.6e-113 411.0 285 74.4
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 9.6e-113 411.0 291 72.5
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 1.6e-112 410.2 285 71.9
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 1.6e-112 410.2 285 71.9
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 1.6e-112 410.2 303 68.6
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.6e-112 410.2 286 73.4
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 2.8e-112 409.5 285 72.3
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 8.1e-112 407.9 282 72.3
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 8.1e-112 407.9 283 72.1
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 1.1e-111 407.5 290 71.0
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.1e-111 407.5 291 71.5
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.8e-111 406.8 315 67.6
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 2.4e-111 406.4 285 70.9
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 4.0e-111 405.6 288 70.1
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 5.3e-111 405.2 290 71.7
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 9.0e-111 404.4 285 71.2
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.2e-110 404.1 286 71.3
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 1.5e-110 403.7 291 71.8
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.5e-110 403.7 281 72.2
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 2.6e-110 402.9 290 71.4
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 3.4e-110 402.5 289 70.2
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 3.4e-110 402.5 286 71.3
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 4.4e-110 402.1 281 73.3
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 7.6e-110 401.4 285 70.2
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 7.6e-110 401.4 290 70.0
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 7.6e-110 401.4 293 68.6
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.9e-110 401.0 285 70.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 9.9e-110 401.0 289 70.2
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.3e-109 400.6 285 70.9
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 2.2e-109 399.8 281 72.2
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.2e-109 399.8 290 69.3
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 8.4e-109 397.9 289 70.2
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 8.4e-109 397.9 302 66.9
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 8.4e-109 397.9 285 70.2
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 1.1e-108 397.5 285 70.2
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 1.1e-108 397.5 290 69.0
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 1.4e-108 397.1 289 70.6
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.4e-108 397.1 281 70.5
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.2e-108 396.0 285 69.8
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 3.2e-108 396.0 281 72.2
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 4.2e-108 395.6 285 70.2
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 7.1e-108 394.8 290 68.3
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.1e-108 394.8 285 69.8
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.1e-108 394.8 285 69.8
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 7.1e-108 394.8 290 68.3
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.3e-108 394.4 285 69.5
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 2.7e-107 392.9 288 69.4
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 3.5e-107 392.5 291 69.4
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 3.5e-107 392.5 333 62.2
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 3.0e-106 389.4 286 69.2
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 6.6e-106 388.3 289 68.5
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 6.6e-106 388.3 288 69.4
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 2.1e-104 383.3 265 73.6
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 2.8e-104 382.9 289 70.2
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 2.8e-104 382.9 278 71.9
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 3.6e-104 382.5 289 69.2
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 6.2e-104 381.7 280 70.4
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 1.4e-103 380.6 278 71.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 1.8e-103 380.2 264 72.0
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 5.3e-103 378.6 286 67.5
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.5e-102 377.1 342 59.6
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 9.9e-102 374.4 380 57.1
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 2.9e-101 372.9 289 67.5
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 7.9e-99 364.8 285 65.6
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 1.0e-98 364.4 289 65.7
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 8.2e-88 328.2 286 61.5
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.7e-85 320.5 354 51.1
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.8e-80 303.1 206 72.8
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.1e-73 281.2 287 55.4
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 3.2e-68 263.1 282 54.3
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 2.1e-67 260.4 161 78.3
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 5.1e-66 255.8 281 52.3
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 9.7e-65 251.5 296 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 1.7e-64 250.8 232 55.6
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 3.8e-61 239.6 170 70.6
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 4.2e-60 236.1 295 46.1
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 1.2e-59 234.6 280 44.3
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 8.2e-56 221.9 230 54.8
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.2e-54 218.0 139 75.5
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.8e-47 194.1 235 47.7
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.2e-43 181.4 126 70.6
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 8.3e-40 168.7 126 63.5
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 5.4e-39 166.0 124 67.7
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 2.5e-36 157.1 125 62.4
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 5.2e-34 149.4 107 70.1
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 3.5e-30 136.7 177 44.6
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 3.5e-30 136.7 242 34.3
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.7e-22 110.5 82 67.1
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 3.2e-15 87.0 260 26.5
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 1.5e-12 78.2 195 28.7
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 3.3e-12 77.0 46 76.1
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.6e-12 76.3 48 70.8
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 6.2e-11 72.8 78 57.7
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 3.7e-08 63.5 49 59.2
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 1.1e-07 62.0 75 52.0


User provided reference genes

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