Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 1.7e-49 199.1 107 100.0
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 1.1e-32 143.3 86 89.5
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 4.0e-27 124.8 86 77.9
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 6.9e-27 124.0 86 79.1
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 6.9e-27 124.0 86 76.7
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 2.0e-26 122.5 86 76.7
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.0e-26 122.5 86 77.9
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.6e-26 122.1 86 77.9
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.6e-26 122.1 86 77.9
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.6e-26 122.1 86 77.9
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 2.6e-26 122.1 86 75.6
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 3.4e-26 121.7 86 77.9
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 5.8e-26 120.9 86 76.7
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 9.9e-26 120.2 86 75.6
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 1.3e-25 119.8 86 75.6
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 2.2e-25 119.0 86 76.7
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 2.9e-25 118.6 86 75.6
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.9e-25 118.6 86 75.6
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 3.8e-25 118.2 86 74.4
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 3.8e-25 118.2 86 76.7
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 75.6
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 4.9e-25 117.9 88 77.3
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 74.4
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 75.6
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 75.6
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 72.1
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 72.1
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 75.6
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 4.9e-25 117.9 86 73.3
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 6.4e-25 117.5 86 74.4
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 6.4e-25 117.5 86 75.6
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 6.4e-25 117.5 86 73.3
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 6.4e-25 117.5 86 70.9
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 6.4e-25 117.5 86 73.3
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 73.3
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 73.3
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 73.3
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 72.1
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 74.4
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 8.4e-25 117.1 86 74.4
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 1.1e-24 116.7 86 72.1
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 1.1e-24 116.7 86 70.9
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 1.1e-24 116.7 86 74.4
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 1.4e-24 116.3 86 74.4
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.9e-24 115.9 86 72.1
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 73.3
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 74.4
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 74.4
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 74.4
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 73.3
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 70.9
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 2.4e-24 115.5 86 70.9
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 3.2e-24 115.2 83 72.3
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 3.2e-24 115.2 86 73.3
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 4.2e-24 114.8 86 72.1
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 4.2e-24 114.8 86 74.4
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 4.2e-24 114.8 86 73.3
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 4.2e-24 114.8 86 72.1
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 5.4e-24 114.4 86 72.1
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 5.4e-24 114.4 86 72.1
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 5.4e-24 114.4 86 72.1
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 7.1e-24 114.0 86 74.4
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 7.1e-24 114.0 86 74.4
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 9.3e-24 113.6 86 74.4
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.6e-23 112.8 87 73.6
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 1.6e-23 112.8 86 72.1
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 2.1e-23 112.5 86 70.9
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 2.7e-23 112.1 86 72.1
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 4.6e-23 111.3 86 67.4
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 4.6e-23 111.3 86 69.8
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 1.8e-22 109.4 86 69.8
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 1.8e-22 109.4 86 68.6
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 5.1e-22 107.8 86 66.3
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 8.7e-22 107.1 86 68.6
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 8.7e-22 107.1 92 65.2
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 8.7e-22 107.1 87 71.3
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 1.5e-21 106.3 86 68.6
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 2.5e-21 105.5 86 67.4
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 3.3e-21 105.1 86 67.4
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 3.3e-21 105.1 86 67.4
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 3.3e-21 105.1 86 67.4
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 5.6e-21 104.4 86 66.3
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 5.6e-21 104.4 86 66.3
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 5.6e-21 104.4 86 66.3
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 5.6e-21 104.4 86 65.1
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 7.4e-21 104.0 86 66.3
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 7.4e-21 104.0 87 69.0
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 7.4e-21 104.0 86 67.4
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 7.4e-21 104.0 88 68.2
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 9.6e-21 103.6 86 65.1
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 9.6e-21 103.6 78 70.5
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 1.3e-20 103.2 86 66.3
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 1.3e-20 103.2 86 66.3
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 1.3e-20 103.2 86 65.1
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 1.3e-20 103.2 87 69.0
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 1.6e-20 102.8 86 66.3
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 1.6e-20 102.8 86 66.3
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 2.1e-20 102.4 86 66.3
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 2.1e-20 102.4 86 66.3
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 2.8e-20 102.1 86 64.0
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 4.8e-20 101.3 86 66.3
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 1.8e-19 99.4 86 65.1
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 3.1e-19 98.6 88 65.9
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 7.6e-18 94.0 88 62.5
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 3.2e-16 88.6 97 53.6
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 3.2e-16 88.6 81 61.7
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 1.5e-13 79.7 86 52.3
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 5.6e-13 77.8 85 52.9
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 3.7e-12 75.1 64 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 6.2e-12 74.3 53 66.0
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 1.1e-11 73.6 86 50.0
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 3.1e-11 72.0 105 41.9
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 1.9e-08 62.8 56 62.5
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 1.8e-06 56.2 34 79.4
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 3.0e-06 55.5 34 79.4


User provided reference genes

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