Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0303500 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D018071 3.3e-290 1001.5 725 100.0
Zm00001eb139650 Zea mays HOM05D000855 ORTHO05D018071 4.7e-119 433.0 520 54.0
Zm00001eb362080 Zea mays HOM05D000855 ORTHO05D018071 1.6e-114 417.9 513 54.4
Zm00001eb083550 Zea mays HOM05D000855 ORTHO05D018071 6.7e-33 146.7 161 53.4
Zm00001eb049500 Zea mays HOM05D000855 ORTHO05D018071 5.0e-28 130.6 94 73.4
Zm00001eb061660 Zea mays HOM05D000855 ORTHO05D018071 5.0e-28 130.6 94 73.4
Zm00001eb264800 Zea mays HOM05D000855 ORTHO05D018071 5.0e-28 130.6 94 73.4
Zm00001eb402610 Zea mays HOM05D000855 ORTHO05D018071 4.2e-27 127.5 94 72.3
Zm00001eb351570 Zea mays HOM05D000855 ORTHO05D002321 7.7e-21 106.7 394 27.7
CiPaw.09G180000 Carya illinoinensis HOM05D000855 ORTHO05D002321 1.3e-20 105.9 453 26.7
Zm00001eb289850 Zea mays HOM05D000855 ORTHO05D002321 5.5e-19 100.5 406 26.8
Haze_20651 Corylus avellana HOM05D000855 ORTHO05D002321 7.2e-19 100.1 443 27.5
MBI14_g26603_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D002321 7.2e-19 100.1 430 27.9
HPP92_012068 Vanilla planifolia HOM05D000855 ORTHO05D002321 1.2e-18 99.4 450 27.6
Ciclev10010946m.g Citrus clementina HOM05D000855 ORTHO05D002321 1.6e-18 99.0 351 30.8
PSO210G7506 Papaver somniferum HOM05D000855 ORTHO05D002321 8.0e-18 96.7 336 29.2
TAR633G0412 Trochodendron aralioides HOM05D000855 ORTHO05D002321 5.2e-17 94.0 476 26.9
QL07p045288 Quercus lobata HOM05D000855 ORTHO05D002321 6.7e-17 93.6 400 29.0
Atru.chr8.2555 Acer truncatum HOM05D000855 ORTHO05D002321 2.6e-16 91.7 335 31.0
TWI74G1097 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 2.6e-16 91.7 464 26.7
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 5.7e-16 90.5 407 28.5
Cfa001590 Carpinus fangiana HOM05D000855 ORTHO05D002321 1.7e-15 89.0 411 26.3
TWI77G0883 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 1.7e-15 89.0 464 27.4
Aqoxy4G03191 Aquilegia oxysepala HOM05D000855 ORTHO05D002321 2.2e-15 88.6 446 26.5
PSO210G3519 Papaver somniferum HOM05D000855 ORTHO05D002321 2.2e-15 88.6 440 26.4
Haze_16938 Corylus avellana HOM05D000855 ORTHO05D002321 2.8e-15 88.2 414 26.1
vmacro20062 Vaccinium macrocarpon HOM05D000855 ORTHO05D002321 2.8e-15 88.2 402 24.9
Manes.08G003300 Manihot esculenta HOM05D000855 ORTHO05D002321 4.8e-15 87.4 419 28.6
TAR623G1395 Trochodendron aralioides HOM05D000855 ORTHO05D002321 6.3e-15 87.0 403 26.8
Zm00001eb371060 Zea mays HOM05D000855 ORTHO05D018071 8.2e-15 86.7 60 76.7
Dinv31338 Davidia involucrata HOM05D000855 ORTHO05D002321 1.1e-14 86.3 405 28.4
CiPaw.02G176700 Carya illinoinensis HOM05D000855 ORTHO05D002321 1.4e-14 85.9 412 24.8
Sabra06G0103400 Salix brachista HOM05D000855 ORTHO05D002321 1.4e-14 85.9 455 27.0
Ah.15g092080 Amaranthus hybridus HOM05D000855 ORTHO05D000193 1.8e-14 85.5 444 25.7
Actinidia04696 Actinidia chinensis HOM05D000855 ORTHO05D002321 2.4e-14 85.1 460 26.3
Actinidia19715 Actinidia chinensis HOM05D000855 ORTHO05D002321 2.4e-14 85.1 460 26.3
TPR.G30257 Trifolium pratense HOM05D000855 ORTHO05D002321 5.3e-14 84.0 259 29.7
CSS0000157 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 1.2e-13 82.8 469 26.7
TAR636G1494 Trochodendron aralioides HOM05D000855 ORTHO05D002321 1.6e-13 82.4 171 32.7
Medtr1g066890 Medicago truncatula HOM05D000855 ORTHO05D002321 2.0e-13 82.0 276 29.7
Thecc.05G053800 Theobroma cacao HOM05D000855 ORTHO05D002321 2.0e-13 82.0 434 27.6
Lj3C979T7 Lonicera japonica HOM05D000855 ORTHO05D002321 2.6e-13 81.6 447 26.2
FAN14G3376 Fragaria x ananassa HOM05D000855 ORTHO05D002321 3.5e-13 81.3 141 38.3
Lj1C924G11 Lonicera japonica HOM05D000855 ORTHO05D001431 3.5e-13 81.3 377 24.7
Potri.008G044600 Populus trichocarpa HOM05D000855 ORTHO05D002321 4.5e-13 80.9 392 25.8
FvH4_6g15320 Fragaria vesca HOM05D000855 ORTHO05D002321 5.9e-13 80.5 141 38.3
Ca_11449_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 7.7e-13 80.1 272 28.3
Os05g0122500 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D001716 1.0e-12 79.7 103 47.6
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 1.0e-12 79.7 133 36.1
FAN05G0228 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.7e-12 79.0 147 37.4
FAN05G3912 Fragaria x ananassa HOM05D000855 ORTHO05D017897 1.7e-12 79.0 147 37.4
Lalb_Chr03g0036491 Lupinus albus HOM05D000855 ORTHO05D002321 1.7e-12 79.0 398 25.4
Sabra08G0030900 Salix brachista HOM05D000855 ORTHO05D002321 2.2e-12 78.6 392 25.0
Glyma.13G137000 Glycine max HOM05D000855 ORTHO05D002321 2.9e-12 78.2 319 27.3
Hma1.2p1_0111F.1_g053880 Hydrangea macrophylla HOM05D000855 ORTHO05D002321 2.9e-12 78.2 117 35.9
Psat6g070600 Pisum sativum HOM05D000855 ORTHO05D002321 2.9e-12 78.2 140 36.4
QL08p056900 Quercus lobata HOM05D000855 ORTHO05D002321 2.9e-12 78.2 411 24.6
VMungo0720G0832 Vigna mungo HOM05D000855 ORTHO05D002321 2.9e-12 78.2 259 29.0
PSO384G0136 Papaver somniferum HOM05D000855 ORTHO05D002321 3.8e-12 77.8 448 26.6
Phvul.007G163600 Phaseolus vulgaris HOM05D000855 ORTHO05D002321 5.0e-12 77.4 341 26.7
Potri.006G131800 Populus trichocarpa HOM05D000855 ORTHO05D002321 5.0e-12 77.4 446 24.7
Medtr2g104120 Medicago truncatula HOM05D000855 ORTHO05D002321 8.5e-12 76.6 273 28.6
RcHm_v2.0_Chr3g0468791 Rosa chinensis HOM05D000855 ORTHO05D002321 8.5e-12 76.6 147 34.7
Migut.F02023 Erythranthe guttata HOM05D000855 ORTHO05D002321 1.1e-11 76.3 364 25.8
PSO339G4758 Papaver somniferum HOM05D000855 ORTHO05D002321 1.1e-11 76.3 421 26.1
RhsimUnG0118400 Rhododendron simsii HOM05D000855 ORTHO05D002321 1.1e-11 76.3 460 26.3
FAN09G3879 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.5e-11 75.9 145 36.6
Glyma.10G049300 Glycine max HOM05D000855 ORTHO05D002321 1.5e-11 75.9 77 49.4
Potri.010G216900 Populus trichocarpa HOM05D000855 ORTHO05D002321 1.5e-11 75.9 397 27.0
Lj5g0028198 Lotus japonicus HOM05D000855 ORTHO05D002321 2.5e-11 75.1 408 27.0
ATR0730G109 Amborella trichopoda HOM05D000855 ORTHO05D001716 3.2e-11 74.7 120 32.5
Glyma.02G087500 Glycine max HOM05D000855 ORTHO05D002321 3.2e-11 74.7 436 26.1
ClCG02G013880 Citrullus lanatus HOM05D000855 ORTHO05D002321 4.2e-11 74.3 397 24.4
Hund20160 Selenicereus undatus HOM05D000855 ORTHO05D002321 4.2e-11 74.3 89 41.6
ATR1159G033 Amborella trichopoda HOM05D000855 ORTHO05D002321 5.5e-11 73.9 143 35.7
Cpa.g.sc114.40 Carica papaya HOM05D000855 ORTHO05D002321 5.5e-11 73.9 422 27.5
Lsat_1_v5_gn_6_29660 Lactuca sativa HOM05D000855 ORTHO05D002321 5.5e-11 73.9 113 34.5
TWI38G0064 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 9.4e-11 73.2 395 23.8
Sed0010715 Sechium edule HOM05D000855 ORTHO05D002321 1.2e-10 72.8 342 23.1
Glyma.10G116800 Glycine max HOM05D000855 ORTHO05D002321 1.6e-10 72.4 410 26.3
Psat2g055760 Pisum sativum HOM05D000855 ORTHO05D002321 2.1e-10 72.0 86 41.9
Sed0014953 Sechium edule HOM05D000855 ORTHO05D002321 2.1e-10 72.0 403 24.6
Gohir.D04G082800 Gossypium hirsutum HOM05D000855 ORTHO05D002321 2.7e-10 71.6 394 25.1
Gorai.012G093500 Gossypium raimondii HOM05D000855 ORTHO05D002321 2.7e-10 71.6 397 26.4
Manes.10G041700 Manihot esculenta HOM05D000855 ORTHO05D002321 2.7e-10 71.6 395 26.3
Oeu007703.1 Olea europaea HOM05D000855 ORTHO05D002321 2.7e-10 71.6 109 36.7
CSS0010994 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 4.7e-10 70.9 433 24.2
ClCG07G013520 Citrullus lanatus HOM05D000855 ORTHO05D002321 6.1e-10 70.5 177 31.1
Manes.10G041900 Manihot esculenta HOM05D000855 ORTHO05D002321 6.1e-10 70.5 394 25.6
Phvul.007G240300 Phaseolus vulgaris HOM05D000855 ORTHO05D002321 6.1e-10 70.5 441 25.2
FAN06G2522 Fragaria x ananassa HOM05D000855 ORTHO05D002321 8.0e-10 70.1 357 26.9
Ah.12g058150 Amaranthus hybridus HOM05D000855 ORTHO05D002321 1.0e-09 69.7 428 25.9
Gohir.A05G344300 Gossypium hirsutum HOM05D000855 ORTHO05D002321 1.0e-09 69.7 396 25.8
TWI15G0675 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 1.0e-09 69.7 408 25.0
Duzib093G2126 Durio zibethinus HOM05D000855 ORTHO05D002321 1.4e-09 69.3 419 28.2
FvH4_7g20250 Fragaria vesca HOM05D000855 ORTHO05D002321 1.4e-09 69.3 357 26.9
Sed0017477 Sechium edule HOM05D000855 ORTHO05D002321 1.4e-09 69.3 115 36.5
DCAR_014961 Daucus carota HOM05D000855 ORTHO05D002321 1.8e-09 68.9 140 30.7
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 1.8e-09 68.9 110 34.5
Sabra10G0167800 Salix brachista HOM05D000855 ORTHO05D002321 1.8e-09 68.9 391 24.3
Zm00001eb112020 Zea mays HOM05D000855 ORTHO05D002321 1.8e-09 68.9 168 28.6
AL6G12240 Arabidopsis lyrata HOM05D000855 ORTHO05D002321 2.3e-09 68.6 124 34.7
COL.COLO4_27083 Corchorus olitorius HOM05D000855 ORTHO05D002321 2.3e-09 68.6 373 28.4
FAN03G1459 Fragaria x ananassa HOM05D000855 ORTHO05D002321 2.3e-09 68.6 357 26.9
CiPaw.02G176900 Carya illinoinensis HOM05D000855 ORTHO05D002321 3.0e-09 68.2 374 23.3
Ciclev10030525m.g Citrus clementina HOM05D000855 ORTHO05D002321 3.0e-09 68.2 399 23.1
MELO3C011728.2 Cucumis melo HOM05D000855 ORTHO05D002321 4.0e-09 67.8 400 24.5
Dinv31342 Davidia involucrata HOM05D000855 ORTHO05D002321 4.0e-09 67.8 390 26.7
FAN01G0071 Fragaria x ananassa HOM05D000855 ORTHO05D002321 4.0e-09 67.8 357 26.3
FAN03G2424 Fragaria x ananassa HOM05D000855 ORTHO05D002321 4.0e-09 67.8 357 26.3
HanXRQChr14g0454651 Helianthus annuus HOM05D000855 ORTHO05D002321 4.0e-09 67.8 100 35.0
AUR62039783 Chenopodium quinoa HOM05D000855 ORTHO05D002321 5.2e-09 67.4 449 23.6
MD12G1124400 Malus domestica HOM05D000855 ORTHO05D002321 5.2e-09 67.4 425 25.9
Oeu026843.1 Olea europaea HOM05D000855 ORTHO05D002321 5.2e-09 67.4 429 24.0
VMungo0720G0251 Vigna mungo HOM05D000855 ORTHO05D002321 5.2e-09 67.4 449 24.9
EL10Ac7g17350 Beta vulgaris HOM05D000855 ORTHO05D002321 6.8e-09 67.0 110 34.5
AUR62024512 Chenopodium quinoa HOM05D000855 ORTHO05D002321 6.8e-09 67.0 379 24.0
Migut.L01658 Erythranthe guttata HOM05D000855 ORTHO05D002321 6.8e-09 67.0 181 26.5
FAN10G3244 Fragaria x ananassa HOM05D000855 ORTHO05D002321 6.8e-09 67.0 357 26.3
Oeu060084.1 Olea europaea HOM05D000855 ORTHO05D002321 6.8e-09 67.0 367 27.2
Cpa.g.sc53.36 Carica papaya HOM05D000855 ORTHO05D002321 8.8e-09 66.6 389 25.2
RcHm_v2.0_Chr1g0364181 Rosa chinensis HOM05D000855 ORTHO05D002321 8.8e-09 66.6 403 26.3
BraA04t16215Z Brassica rapa HOM05D000855 ORTHO05D002321 1.2e-08 66.2 277 24.9
AUR62026103 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.2e-08 66.2 374 24.9
Glyma.20G198402 Glycine max HOM05D000855 ORTHO05D002321 1.2e-08 66.2 88 38.6
Lalb_Chr21g0314651 Lupinus albus HOM05D000855 ORTHO05D002321 1.2e-08 66.2 273 28.9
Oeu035143.1 Olea europaea HOM05D000855 ORTHO05D002321 1.2e-08 66.2 425 25.4
THA.LOC104826984 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 1.2e-08 66.2 139 31.7
EL10Ac5g12631 Beta vulgaris HOM05D000855 ORTHO05D002321 1.5e-08 65.9 380 24.7
Lsat_1_v5_gn_2_109641 Lactuca sativa HOM05D000855 ORTHO05D002321 1.5e-08 65.9 91 37.4
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.5e-08 65.9 426 24.9
Ca_27423_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 2.0e-08 65.5 394 24.4
Lalb_Chr03g0036481 Lupinus albus HOM05D000855 ORTHO05D002321 2.6e-08 65.1 392 23.7
AUR62040020 Chenopodium quinoa HOM05D000855 ORTHO05D002321 4.4e-08 64.3 400 23.0
AUR62044639 Chenopodium quinoa HOM05D000855 ORTHO05D002321 4.4e-08 64.3 400 23.0
Lj5g0013876 Lotus japonicus HOM05D000855 ORTHO05D002321 4.4e-08 64.3 399 24.3
Prupe.6G241400 Prunus persica HOM05D000855 ORTHO05D002321 5.7e-08 63.9 460 25.4
Sc07g0006250 Simmondsia chinensis HOM05D000855 ORTHO05D002321 5.7e-08 63.9 380 22.9
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 5.7e-08 63.9 451 26.4
PSO063G7420 Papaver somniferum HOM05D000855 ORTHO05D001716 7.5e-08 63.5 117 35.0
PSO832G0050 Papaver somniferum HOM05D000855 ORTHO05D001716 7.5e-08 63.5 117 35.0
AT3G54760 Arabidopsis thaliana HOM05D000855 ORTHO05D002321 9.8e-08 63.2 274 23.4
Aqoxy3G02940 Aquilegia oxysepala HOM05D000855 ORTHO05D008469 1.3e-07 62.8 298 23.5
MELO3C013022.2 Cucumis melo HOM05D000855 ORTHO05D002321 1.3e-07 62.8 177 29.4
Psat0s1977g0040 Pisum sativum HOM05D000855 ORTHO05D002321 1.3e-07 62.8 102 33.3
BcaC02g09702 Brassica carinata HOM05D000855 ORTHO05D002321 1.7e-07 62.4 433 24.0
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 1.7e-07 62.4 437 24.3
Potri.004G130600 Populus trichocarpa HOM05D000855 ORTHO05D001716 1.7e-07 62.4 112 32.1
AL5G35830 Arabidopsis lyrata HOM05D000855 ORTHO05D002321 2.2e-07 62.0 269 24.5
EL10Ac3g07139 Beta vulgaris HOM05D000855 ORTHO05D002321 2.2e-07 62.0 446 23.5
BolC4t25319H Brassica oleracea HOM05D000855 ORTHO05D002321 2.2e-07 62.0 434 22.6
Duzib114G0150 Durio zibethinus HOM05D000855 ORTHO05D002321 2.2e-07 62.0 391 22.0
Lj6g0011965 Lotus japonicus HOM05D000855 ORTHO05D002321 2.2e-07 62.0 413 24.9
MBI10_g28018_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D001716 2.8e-07 61.6 183 31.1
Zm00001eb331600 Zea mays HOM05D000855 ORTHO05D001716 2.8e-07 61.6 169 30.2
Cc09_g02640 Coffea canephora HOM05D000855 ORTHO05D002321 3.7e-07 61.2 430 26.3
Psat6g049760 Pisum sativum HOM05D000855 ORTHO05D002321 3.7e-07 61.2 323 23.2
Zm00001eb355200 Zea mays HOM05D042438 ORTHO05D442798 3.7e-07 61.2 94 41.5
AUR62010520 Chenopodium quinoa HOM05D000855 ORTHO05D002321 6.3e-07 60.5 486 23.9
CAN.G608.13 Capsicum annuum HOM05D000855 ORTHO05D002321 8.3e-07 60.1 438 24.7
COL.COLO4_23754 Corchorus olitorius HOM05D000855 ORTHO05D002321 8.3e-07 60.1 460 22.6
Dinv20648 Davidia involucrata HOM05D000855 ORTHO05D008469 8.3e-07 60.1 80 38.8
TAR374G0945 Trochodendron aralioides HOM05D000855 ORTHO05D008469 8.3e-07 60.1 168 28.6
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 1.8e-06 58.9 437 23.8
BraA04t16217Z Brassica rapa HOM05D000855 ORTHO05D002321 1.8e-06 58.9 432 23.8
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.8e-06 58.9 441 26.3
Lj7C593G6 Lonicera japonica HOM05D000855 ORTHO05D001716 2.4e-06 58.5 144 31.9
CDE05G0504 Ceratophyllum demersum HOM05D000855 ORTHO05D001716 3.1e-06 58.2 105 34.3
Medtr1g049120 Medicago truncatula HOM05D000855 ORTHO05D002321 3.1e-06 58.2 422 24.2
Thecc.10G067400 Theobroma cacao HOM05D000855 ORTHO05D002321 3.1e-06 58.2 394 23.4
TAR371G0869 Trochodendron aralioides HOM05D000855 ORTHO05D001716 3.1e-06 58.2 83 36.1
ECA238G1586 Erigeron canadensis HOM05D000855 ORTHO05D002321 4.1e-06 57.8 77 36.4
Lj1g0022369 Lotus japonicus HOM05D000855 ORTHO05D001716 4.1e-06 57.8 105 30.5
MD07G1179800 Malus domestica HOM05D000855 ORTHO05D002321 4.1e-06 57.8 340 24.1
TPR.G35697 Trifolium pratense HOM05D000855 ORTHO05D002321 4.1e-06 57.8 445 24.0
Zm00001eb209400 Zea mays HOM05D042438 ORTHO05D446332 4.1e-06 57.8 93 38.7
Sabra04G0087000 Salix brachista HOM05D000855 ORTHO05D001716 5.4e-06 57.4 103 34.0
AUR62017379 Chenopodium quinoa HOM05D000855 ORTHO05D002321 7.0e-06 57.0 502 23.5
CsaV3_5G006280 Cucumis sativus L. HOM05D000855 ORTHO05D002321 7.0e-06 57.0 397 24.7
Eucgr.G02799 Eucalyptus grandis HOM05D000855 ORTHO05D002321 7.0e-06 57.0 447 24.4
CSS0017800 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D001716 9.1e-06 56.6 154 29.9
Os07g0694500 Oryza sativa ssp. japonica HOM05D000855 ORTHO05D002321 9.1e-06 56.6 68 38.2
Rhsim08G0053500 Rhododendron simsii HOM05D000855 ORTHO05D001716 9.1e-06 56.6 150 28.0


User provided reference genes

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