Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 3.7e-76 288.1 144 100.0
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 2.7e-42 175.6 104 83.7
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.6e-31 138.7 96 71.9
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 6.2e-31 137.9 85 74.1
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 8.1e-31 137.5 85 74.1
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.4e-30 136.7 84 73.8
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 1.8e-30 136.3 85 72.9
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.4e-30 136.0 85 72.9
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 2.4e-30 136.0 89 67.4
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.4e-30 136.0 85 72.9
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 3.1e-30 135.6 97 66.0
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 4.0e-30 135.2 84 73.8
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 5.2e-30 134.8 91 69.2
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 5.2e-30 134.8 91 69.2
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 5.2e-30 134.8 96 66.7
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 6.8e-30 134.4 84 73.8
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 8.9e-30 134.0 91 69.2
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 8.9e-30 134.0 89 71.9
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.2e-29 133.7 84 71.4
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.2e-29 133.7 85 71.8
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.2e-29 133.7 91 70.3
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.2e-29 133.7 91 70.3
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.5e-29 133.3 93 64.5
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.5e-29 133.3 85 71.8
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.5e-29 133.3 84 72.6
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 2.6e-29 132.5 96 68.8
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 3.4e-29 132.1 90 67.8
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 3.4e-29 132.1 84 70.2
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 3.4e-29 132.1 95 65.3
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 4.4e-29 131.7 97 62.9
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 4.4e-29 131.7 90 68.9
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 5.8e-29 131.3 85 69.4
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 5.8e-29 131.3 95 66.3
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 5.8e-29 131.3 87 70.1
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 5.8e-29 131.3 84 70.2
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 5.8e-29 131.3 89 68.5
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 5.8e-29 131.3 88 68.2
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 5.8e-29 131.3 91 67.0
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 7.6e-29 131.0 86 72.1
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 7.6e-29 131.0 84 70.2
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 9.9e-29 130.6 84 71.4
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 9.9e-29 130.6 89 68.5
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 9.9e-29 130.6 85 69.4
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.3e-28 130.2 92 66.3
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.7e-28 129.8 84 71.4
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 2.2e-28 129.4 85 70.6
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.9e-28 129.0 91 67.0
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 2.9e-28 129.0 89 66.3
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.8e-28 128.6 98 63.3
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 3.8e-28 128.6 82 70.7
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.8e-28 128.6 90 64.4
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 3.8e-28 128.6 83 69.9
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 3.8e-28 128.6 84 71.4
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 3.8e-28 128.6 84 70.2
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 4.9e-28 128.3 88 67.0
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 4.9e-28 128.3 105 59.0
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 4.9e-28 128.3 84 69.0
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 6.4e-28 127.9 91 65.9
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 6.4e-28 127.9 85 69.4
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 6.4e-28 127.9 84 67.9
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 6.4e-28 127.9 84 67.9
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 8.4e-28 127.5 82 67.1
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 8.4e-28 127.5 85 67.1
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 8.4e-28 127.5 85 69.4
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 1.1e-27 127.1 91 63.7
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 1.4e-27 126.7 89 67.4
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.4e-27 126.7 93 65.6
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.4e-27 126.7 88 65.9
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 1.9e-27 126.3 82 69.5
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 1.9e-27 126.3 84 69.0
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 2.4e-27 125.9 88 68.2
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 2.4e-27 125.9 81 70.4
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 2.4e-27 125.9 82 69.5
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.4e-27 125.9 95 63.2
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 2.4e-27 125.9 86 66.3
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.2e-27 125.6 89 66.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 3.2e-27 125.6 84 67.9
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 4.1e-27 125.2 90 65.6
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 4.1e-27 125.2 84 69.0
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 5.4e-27 124.8 95 62.1
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 5.4e-27 124.8 101 63.4
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 5.4e-27 124.8 91 63.7
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 7.1e-27 124.4 85 64.7
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 7.1e-27 124.4 89 64.0
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 9.2e-27 124.0 84 66.7
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.2e-26 123.6 85 64.7
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.1e-26 122.9 83 66.3
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 2.1e-26 122.9 83 66.3
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 2.1e-26 122.9 86 65.1
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 2.1e-26 122.9 107 57.9
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.7e-26 122.5 83 67.5
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 2.7e-26 122.5 83 67.5
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 6.0e-26 121.3 85 63.5
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 6.0e-26 121.3 88 63.6
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.7e-25 119.8 91 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.3e-25 119.4 84 64.3
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.3e-25 119.4 85 63.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 2.3e-25 119.4 85 63.5
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 5.1e-25 118.2 78 69.2
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 6.6e-25 117.9 93 59.1
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.5e-24 116.7 90 58.9
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.2e-23 113.6 67 77.6
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.6e-23 113.2 111 51.4
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 3.6e-23 112.1 69 73.9
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 6.2e-23 111.3 98 54.1
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.0e-22 108.6 70 67.1
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 4.0e-22 108.6 70 67.1
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 4.0e-22 108.6 69 72.5
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 5.2e-22 108.2 84 54.8
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 6.9e-22 107.8 85 55.3
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 4.4e-21 105.1 65 72.3
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 7.6e-21 104.4 68 69.1
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 3.5e-18 95.5 86 55.8
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.8e-15 85.9 89 41.6
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.6e-13 79.3 134 38.1
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 4.5e-13 78.6 67 52.2
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 6.4e-12 74.7 64 54.7
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.9e-11 73.2 98 41.8
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 2.4e-11 72.8 82 45.1
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.1e-10 69.7 85 42.4
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 2.7e-10 69.3 48 62.5
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.8e-09 66.6 51 58.8
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 3.0e-09 65.9 47 63.8
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 1.5e-08 63.5 44 65.9


User provided reference genes

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