Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0300650 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006658 6.2e-54 213.8 101 100.0
Os08g0290500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006658 4.8e-14 81.3 65 64.6
Zm00001eb122030 Zea mays HOM05D000590 ORTHO05D006658 6.3e-14 80.9 46 73.9
TAR627G0624 Trochodendron aralioides HOM05D000590 ORTHO05D006658 2.4e-13 79.0 42 76.2
TAR627G0119 Trochodendron aralioides HOM05D000590 ORTHO05D006658 4.1e-13 78.2 42 76.2
GSVIVG01014083001 Vitis vinifera HOM05D000590 ORTHO05D006658 7.0e-13 77.4 42 78.6
Prupe.4G155300 Prunus persica HOM05D000590 ORTHO05D006658 1.6e-12 76.3 42 71.4
EL10Ac4g08438 Beta vulgaris HOM05D000590 ORTHO05D006658 2.6e-12 75.5 42 73.8
AUR62013940 Chenopodium quinoa HOM05D000590 ORTHO05D006658 3.5e-12 75.1 48 70.8
FvH4_3g17540 Fragaria vesca HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
FvH4_3g17570 Fragaria vesca HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
FAN11G1469 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
FAN16G1913 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
FAN21G3792 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
FAN25G1530 Fragaria x ananassa HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
MD03G1251300 Malus domestica HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
RcHm_v2.0_Chr5g0029281 Rosa chinensis HOM05D000590 ORTHO05D006658 3.5e-12 75.1 42 71.4
ClCG11G017110 Citrullus lanatus HOM05D000590 ORTHO05D006658 4.5e-12 74.7 50 64.0
PGR031G2043 Punica granatum HOM05D000590 ORTHO05D006658 4.5e-12 74.7 43 67.4
AUR62019672 Chenopodium quinoa HOM05D000590 ORTHO05D006658 5.9e-12 74.3 48 70.8
Nn6g34385 Nelumbo nucifera HOM05D000590 ORTHO05D006658 5.9e-12 74.3 50 64.0
RcHm_v2.0_Chr5g0029161 Rosa chinensis HOM05D000590 ORTHO05D006658 1.0e-11 73.6 42 69.0
Ah.06g187630 Amaranthus hybridus HOM05D000590 ORTHO05D006658 1.3e-11 73.2 42 71.4
HanXRQChr11g0330421 Helianthus annuus HOM05D000590 ORTHO05D006658 1.3e-11 73.2 42 69.0
MELO3C025676.2 Cucumis melo HOM05D000590 ORTHO05D006658 1.7e-11 72.8 50 62.0
Manes.03G078000 Manihot esculenta HOM05D000590 ORTHO05D006658 1.7e-11 72.8 42 69.0
Sed0014657 Sechium edule HOM05D000590 ORTHO05D006658 1.7e-11 72.8 42 69.0
Sc07g0002360 Simmondsia chinensis HOM05D000590 ORTHO05D006658 1.7e-11 72.8 42 69.0
QL08p025144 Quercus lobata HOM05D000590 ORTHO05D006658 2.2e-11 72.4 42 66.7
RcHm_v2.0_Chr5g0029121 Rosa chinensis HOM05D000590 ORTHO05D006658 2.2e-11 72.4 42 66.7
vmacro11976 Vaccinium macrocarpon HOM05D000590 ORTHO05D006658 2.2e-11 72.4 42 69.0
Aqoxy1G01876 Aquilegia oxysepala HOM05D000590 ORTHO05D006658 2.9e-11 72.0 42 64.3
AL3G27050 Arabidopsis lyrata HOM05D000590 ORTHO05D006658 2.9e-11 72.0 47 59.6
COL.COLO4_17463 Corchorus olitorius HOM05D000590 ORTHO05D006658 2.9e-11 72.0 46 65.2
ECA236G0454 Erigeron canadensis HOM05D000590 ORTHO05D006658 2.9e-11 72.0 42 66.7
Lalb_Chr01g0006941 Lupinus albus HOM05D000590 ORTHO05D006658 2.9e-11 72.0 42 69.0
PSO541G5312 Papaver somniferum HOM05D000590 ORTHO05D006658 2.9e-11 72.0 42 69.0
PSO675G2935 Papaver somniferum HOM05D000590 ORTHO05D006658 2.9e-11 72.0 42 69.0
Actinidia12609 Actinidia chinensis HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 66.7
Ciclev10021099m.g Citrus clementina HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 66.7
Haze_08447 Corylus avellana HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 66.7
CsaV3_4G032770 Cucumis sativus L. HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 66.7
Dinv13353 Davidia involucrata HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 66.7
Oeu005375.1 Olea europaea HOM05D000590 ORTHO05D006658 5.0e-11 71.2 42 64.3
ATR0051G042 Amborella trichopoda HOM05D000590 ORTHO05D006658 6.5e-11 70.9 44 61.4
CANSAT56G2009 Cannabis sativa HOM05D000590 ORTHO05D006658 8.5e-11 70.5 42 64.3
CiPaw.12G109900 Carya illinoinensis HOM05D000590 ORTHO05D006658 8.5e-11 70.5 42 69.0
TWI39G0773 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 8.5e-11 70.5 42 66.7
Ca_12744_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006658 1.1e-10 70.1 42 69.0
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 1.1e-10 70.1 42 66.7
TWI38G1174 Tripterygium wilfordii HOM05D000590 ORTHO05D006658 1.5e-10 69.7 42 64.3
HPP92_021749 Vanilla planifolia HOM05D000590 ORTHO05D006658 1.5e-10 69.7 43 65.1
VMungo1127G1365 Vigna mungo HOM05D000590 ORTHO05D006658 1.5e-10 69.7 42 66.7
AT3G14740 Arabidopsis thaliana HOM05D000590 ORTHO05D006658 1.9e-10 69.3 42 64.3
Carub.0003s1441 Capsella rubella HOM05D000590 ORTHO05D006658 1.9e-10 69.3 42 64.3
Eucgr.F03226 Eucalyptus grandis HOM05D000590 ORTHO05D006658 1.9e-10 69.3 42 64.3
Aa31LG8G1960 Aethionema arabicum HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 64.3
Ah.06g185580 Amaranthus hybridus HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 66.7
BraA05t22287Z Brassica rapa HOM05D000590 ORTHO05D006658 2.5e-10 68.9 46 60.9
CARHR089680 Cardamine hirsuta HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 61.9
Cpa.g.sc1162.1 Carica papaya HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 64.3
CiPaw.11G155300 Carya illinoinensis HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 66.7
Thhalv10021064m.g Eutrema salsugineum HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 61.9
Lj8P145T49 Lonicera japonica HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 64.3
Psat4g138760 Pisum sativum HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 61.9
THA.LOC104815580 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 61.9
unitig_699.g19239 Utricularia gibba HOM05D000590 ORTHO05D006658 2.5e-10 68.9 42 61.9
BcaB06g25360 Brassica carinata HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
BcaC05g29040 Brassica carinata HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
A01p39070 Brassica napus HOM05D000590 ORTHO05D006658 3.2e-10 68.6 48 54.2
A05p34710 Brassica napus HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
C05p52510 Brassica napus HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
BolC5t33934H Brassica oleracea HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
BraA01t03954Z Brassica rapa HOM05D000590 ORTHO05D006658 3.2e-10 68.6 48 54.2
CAN.G375.56 Capsicum annuum HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 66.7
Rhsim06G0212500 Rhododendron simsii HOM05D001914 ORTHO05D001983 3.2e-10 68.6 42 64.3
Sp3g12970 Schrenkiella parvula HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 61.9
TPR.G16489 Trifolium pratense HOM05D000590 ORTHO05D006658 3.2e-10 68.6 42 66.7
CDE06G1605 Ceratophyllum demersum HOM05D000590 ORTHO05D006658 4.2e-10 68.2 42 61.9
Lj3g0026308 Lotus japonicus HOM05D000590 ORTHO05D006658 4.2e-10 68.2 42 64.3
Cc05_g10610 Coffea canephora HOM05D000590 ORTHO05D006658 5.5e-10 67.8 43 65.1
Atru.chr2.1901 Acer truncatum HOM05D000590 ORTHO05D006658 7.2e-10 67.4 42 61.9
Migut.H02030 Erythranthe guttata HOM05D000590 ORTHO05D006658 7.2e-10 67.4 50 58.0
Lsat_1_v5_gn_7_100300 Lactuca sativa HOM05D000590 ORTHO05D006658 7.2e-10 67.4 42 61.9
SGA_v2.0_scaffold130G34256 Striga asiatica HOM05D000590 ORTHO05D006658 7.2e-10 67.4 42 64.3
Duzib213G0379 Durio zibethinus HOM05D000590 ORTHO05D006658 9.4e-10 67.0 43 62.8
Nitab4.5_0003618g0030 Nicotiana tabacum HOM05D001914 ORTHO05D001983 9.4e-10 67.0 48 60.4
Phvul.011G170000 Phaseolus vulgaris HOM05D000590 ORTHO05D006658 9.4e-10 67.0 42 61.9
Potri.011G103100 Populus trichocarpa HOM05D000590 ORTHO05D006658 9.4e-10 67.0 46 60.9
Hund10399 Selenicereus undatus HOM05D000590 ORTHO05D006658 9.4e-10 67.0 42 64.3
arahy.Tifrunner.gnm1.ann1.14DVUV Arachis hypogaea HOM05D000590 ORTHO05D006658 1.2e-09 66.6 40 70.0
arahy.Tifrunner.gnm1.ann1.4S3ZRX Arachis hypogaea HOM05D000590 ORTHO05D006658 1.2e-09 66.6 40 70.0
Medtr8g042510 Medicago truncatula HOM05D000590 ORTHO05D006658 1.2e-09 66.6 42 61.9
Thecc.07G135100 Theobroma cacao HOM05D000590 ORTHO05D006658 1.6e-09 66.2 43 60.5
DCAR_019620 Daucus carota HOM05D000590 ORTHO05D006658 2.1e-09 65.9 42 64.3
Potri.001G382500 Populus trichocarpa HOM05D000590 ORTHO05D006658 2.1e-09 65.9 46 56.5
Sabra11G0082500 Salix brachista HOM05D000590 ORTHO05D006658 2.1e-09 65.9 46 58.7
Sabra16G0251900 Salix brachista HOM05D000590 ORTHO05D006658 2.1e-09 65.9 46 56.5
BcaC09g48444 Brassica carinata HOM05D000590 ORTHO05D006658 2.7e-09 65.5 42 61.9
C01p49700 Brassica napus HOM05D000590 ORTHO05D006658 2.7e-09 65.5 42 61.9
BolC1t04926H Brassica oleracea HOM05D000590 ORTHO05D006658 2.7e-09 65.5 42 61.9
Sabra11G0077600 Salix brachista HOM05D000590 ORTHO05D006658 2.7e-09 65.5 46 58.7
Gohir.A04G045500 Gossypium hirsutum HOM05D000590 ORTHO05D006658 3.6e-09 65.1 43 62.8
Gohir.D05G337300 Gossypium hirsutum HOM05D000590 ORTHO05D006658 3.6e-09 65.1 43 62.8
Gorai.009G361500 Gossypium raimondii HOM05D000590 ORTHO05D006658 3.6e-09 65.1 43 62.8
MSTRG.6694 Avicennia marina HOM05D000590 ORTHO05D006658 6.1e-09 64.3 50 54.0
CDE02G4695 Ceratophyllum demersum HOM05D000590 ORTHO05D006658 8.0e-09 63.9 46 54.3
PGSC0003DMG400007086 Solanum tuberosum HOM05D000590 ORTHO05D006658 8.0e-09 63.9 43 58.1
THA.LOC104822584 Tarenaya hassleriana HOM05D000590 ORTHO05D006658 8.0e-09 63.9 42 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1598 Anthoceros agrestis HOM05D000590 ORTHO05D006658 1.8e-08 62.8 58 53.4
Sopen07g030360 Solanum pennellii HOM05D000590 ORTHO05D006658 2.3e-08 62.4 43 58.1
MD04G1118000 Malus domestica HOM05D000590 ORTHO05D006658 3.0e-08 62.0 42 59.5
PRCOL_00005644 Prasinoderma coloniale HOM05D000590 ORTHO05D006658 4.0e-08 61.6 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05D000590 ORTHO05D005739 6.7e-08 60.8 37 64.9
Solyc07g062100.4 Solanum lycopersicum HOM05D000590 ORTHO05D006658 6.7e-08 60.8 43 55.8
Glyma.15G210600 Glycine max HOM05D000590 ORTHO05D006658 1.5e-07 59.7 47 57.4
Glyma.15G211600 Glycine max HOM05D000590 ORTHO05D006658 1.5e-07 59.7 47 57.4
Pp3c9_22160 Physcomitrium patens HOM05D000590 ORTHO05D006658 2.0e-07 59.3 42 54.8
Pp3c16_18950 Physcomitrium patens HOM05D000590 ORTHO05D005739 2.6e-07 58.9 38 60.5
SEGI_07265 Sequoiadendron giganteum HOM05D000590 ORTHO05D006658 2.6e-07 58.9 40 62.5
Nitab4.5_0001140g0100 Nicotiana tabacum HOM05D001914 ORTHO05D001983 4.4e-07 58.2 43 55.8
Peaxi162Scf00111g10126 Petunia axillaris HOM05D001914 ORTHO05D001983 5.7e-07 57.8 48 56.2
Pp3c15_18060 Physcomitrium patens HOM05D000590 ORTHO05D006658 5.7e-07 57.8 37 59.5
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 1.3e-06 56.6 38 55.3
SMO143G0053 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 1.3e-06 56.6 34 64.7
MBI11_g00125_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D005739 1.7e-06 56.2 38 57.9
SalBow6G2045 Salvia bowleyana HOM05D000590 ORTHO05D005739 1.7e-06 56.2 37 59.5
CBR_g9119 Chara braunii HOM05D000409 ORTHO05D000184 2.2e-06 55.8 39 59.0
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 2.2e-06 55.8 37 59.5
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 2.2e-06 55.8 37 56.8
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 2.2e-06 55.8 37 56.8
AL4G26890 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 4.8e-06 54.7 37 56.8
Mapoly0051s0016 Marchantia polymorpha HOM05D000590 ORTHO05D005739 4.8e-06 54.7 37 59.5
Oeu013403.1 Olea europaea HOM05D000590 ORTHO05D005739 4.8e-06 54.7 35 60.0
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 4.8e-06 54.7 48 45.8
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
DCAR_029931 Daucus carota HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
ECA233G2054 Erigeron canadensis HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
Peaxi162Scf00286g00341 Petunia axillaris HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
Thecc.04G180700 Theobroma cacao HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 6.3e-06 54.3 37 56.8
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Aa31LG5G5330 Aethionema arabicum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
AT2G31650 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
A09p67280 Brassica napus HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
C08p51570 Brassica napus HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
BolC8t52685H Brassica oleracea HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 8.2e-06 53.9 37 56.8
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
CARHR125270 Cardamine hirsuta HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Thhalv10016217m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8
Sp4g14050 Schrenkiella parvula HOM05D000590 ORTHO05D005739 8.2e-06 53.9 37 56.8


User provided reference genes

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