Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.1e-291 1003.8 669 100.0
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.9e-131 473.4 576 65.8
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 2.3e-51 208.0 380 58.9
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.4e-29 134.8 522 29.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.6e-28 132.1 513 28.3
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.6e-28 132.1 537 30.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.7e-27 128.6 480 28.3
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-26 125.2 534 30.5
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.9e-26 125.2 483 28.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 2.5e-26 124.8 497 29.2
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.6e-25 122.1 502 27.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 6.2e-25 120.2 536 29.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.8e-24 118.6 521 35.5
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.0e-24 116.3 318 34.6
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.2e-23 115.9 534 28.3
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.5e-23 115.5 488 28.5
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.0e-23 115.2 542 27.1
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 5.8e-23 113.6 487 27.7
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.8e-22 110.9 529 29.1
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.9e-22 110.5 486 31.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 6.4e-22 110.2 528 33.5
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 6.4e-22 110.2 545 30.3
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-21 109.4 165 40.0
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.1e-21 109.4 489 27.8
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.2e-21 107.8 530 27.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 5.4e-21 107.1 525 28.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.1e-21 106.7 518 35.9
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 9.3e-21 106.3 290 32.4
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.7e-20 104.8 497 38.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.5e-20 104.4 478 26.4
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.6e-20 104.0 470 24.9
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 7.8e-20 103.2 269 34.6
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.8e-20 103.2 535 27.9
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.0e-19 102.8 494 28.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.0e-19 102.8 518 36.7
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.3e-19 102.4 562 27.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.3e-19 102.4 562 27.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.0e-19 101.3 293 33.1
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 3.9e-19 100.9 542 26.4
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 6.6e-19 100.1 296 35.5
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-18 99.4 484 28.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.1e-18 99.4 500 37.2
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.1e-18 99.4 532 33.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.5e-18 99.0 514 32.1
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.9e-18 98.6 213 37.6
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.3e-18 96.7 234 35.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.3e-18 96.7 487 26.1
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.3e-17 95.9 495 31.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-17 95.9 287 32.4
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.6e-17 95.5 544 26.7
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.8e-17 94.7 477 26.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.8e-17 94.7 513 26.1
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 2.8e-17 94.7 535 29.2
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.6e-17 94.4 157 39.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 3.6e-17 94.4 541 27.2
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 6.2e-17 93.6 518 28.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 6.2e-17 93.6 518 28.0
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 8.1e-17 93.2 285 33.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 8.1e-17 93.2 206 37.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.1e-16 92.8 532 27.3
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-16 92.8 179 38.5
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.1e-16 92.8 287 33.4
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.8e-16 92.0 493 36.7
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.4e-16 91.7 159 39.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.4e-16 91.7 539 28.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.4e-16 91.7 526 30.2
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 5.3e-16 90.5 209 37.8
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 5.3e-16 90.5 169 39.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.3e-16 90.5 492 26.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 6.9e-16 90.1 261 32.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 9.0e-16 89.7 320 31.9
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.2e-15 89.4 492 33.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.5e-15 89.0 532 26.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.5e-15 89.0 528 25.9
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.5e-15 89.0 528 25.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.0e-15 88.6 536 27.4
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.0e-15 88.6 485 25.4
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.6e-15 88.2 209 39.7
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.5e-15 87.4 573 31.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.8e-15 87.0 506 35.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 7.6e-15 86.7 531 27.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 9.9e-15 86.3 465 27.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 9.9e-15 86.3 516 26.4
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.9e-15 86.3 506 25.9
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.3e-14 85.9 531 26.4
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.3e-14 85.9 526 31.0
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-14 85.9 278 31.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.3e-14 85.9 183 39.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.7e-14 85.5 527 33.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.1e-13 82.8 517 31.1
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.4e-13 82.4 472 29.0
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.9e-13 82.0 531 25.6
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.9e-13 82.0 197 34.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.2e-13 81.3 210 34.8
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 3.2e-13 81.3 503 36.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.2e-13 80.9 495 24.2
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 5.4e-13 80.5 193 35.8
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 9.3e-13 79.7 171 35.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.2e-12 79.3 469 27.1
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-12 79.3 506 25.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.6e-12 79.0 494 26.5
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.1e-12 78.6 348 30.2
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 3.5e-12 77.8 168 36.9
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.6e-12 77.4 267 30.7
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 4.6e-12 77.4 526 27.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 4.6e-12 77.4 241 31.1
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.0e-11 76.3 197 35.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.0e-11 76.3 323 27.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.3e-11 75.9 282 30.9
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.8e-11 75.5 474 26.6
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.0e-11 74.7 337 31.2
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.0e-11 74.7 310 28.7
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.7e-11 73.6 544 26.3
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 8.7e-11 73.2 526 27.0
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 8.7e-11 73.2 339 30.7
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.7e-11 73.2 498 25.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.1e-10 72.8 267 31.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.1e-10 72.8 310 28.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-10 72.4 394 26.6
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-10 72.4 525 25.5
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 3.3e-10 71.2 523 28.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.3e-10 71.2 519 37.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 7.4e-10 70.1 266 29.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 9.6e-10 69.7 518 24.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 9.6e-10 69.7 501 28.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.3e-09 69.3 497 27.4
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.6e-09 68.9 160 37.5
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.6e-09 68.9 537 36.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.6e-09 68.9 514 25.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-09 68.6 312 29.8
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-09 68.6 461 30.8
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-09 68.6 461 30.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.8e-09 67.4 334 28.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.1e-09 66.6 483 24.6
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.1e-08 66.2 164 36.6
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.1e-08 66.2 519 36.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.4e-08 65.9 486 25.9
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 5.3e-08 63.9 275 30.5
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 5.3e-08 63.9 518 26.6
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.9e-08 63.5 401 27.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.5e-07 62.4 520 25.8
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-07 62.0 487 23.8
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.0e-07 62.0 278 28.1
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 4.5e-07 60.8 285 27.7
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.8e-07 60.5 230 30.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 5.8e-07 60.5 270 28.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.8e-07 60.5 552 32.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.2e-06 58.5 521 27.3
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 4.9e-06 57.4 112 37.5


User provided reference genes

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