Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 3.0e-207 724.9 367 100.0
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 3.3e-129 465.7 366 69.7
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 2.2e-72 276.9 365 44.7
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 3.4e-65 253.1 359 44.6
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 8.3e-64 248.4 398 40.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 5.4e-63 245.7 421 40.1
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 7.0e-63 245.4 384 40.6
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.0e-62 243.8 383 40.7
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 2.9e-61 240.0 294 45.6
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 2.9e-61 240.0 334 42.8
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 3.8e-61 239.6 405 39.3
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 5.0e-61 239.2 412 38.1
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 8.6e-61 238.4 413 39.7
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 8.6e-61 238.4 395 40.0
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.5e-60 237.7 242 49.2
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.9e-60 237.3 272 48.2
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.3e-60 236.5 238 52.9
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 3.3e-60 236.5 283 47.7
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.3e-60 236.5 424 39.6
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 4.3e-60 236.1 413 40.7
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.3e-60 236.1 296 46.3
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 5.6e-60 235.7 385 41.6
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 9.5e-60 235.0 405 39.0
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.6e-59 234.2 389 39.8
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.1e-59 233.8 391 40.4
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 2.8e-59 233.4 404 39.9
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 3.6e-59 233.0 384 39.1
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.4e-58 231.1 275 47.3
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.4e-58 231.1 271 46.9
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.4e-58 231.1 407 39.3
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.4e-58 231.1 278 48.2
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 3.0e-58 229.9 417 39.1
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 4.0e-58 229.6 363 39.9
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 4.0e-58 229.6 286 45.1
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 5.2e-58 229.2 294 45.2
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.2e-57 228.0 391 40.4
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.4e-57 226.5 420 38.1
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.4e-57 226.1 404 36.1
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.4e-57 226.1 404 36.1
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.4e-57 226.1 404 36.1
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 5.7e-57 225.7 410 39.3
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 5.7e-57 225.7 293 43.3
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 9.8e-57 224.9 366 40.4
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.3e-56 224.6 401 38.7
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.7e-56 224.2 394 40.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.7e-56 224.2 419 37.2
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.7e-56 224.2 360 40.8
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 2.2e-56 223.8 237 51.5
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 3.7e-56 223.0 393 37.7
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 4.9e-56 222.6 386 39.6
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.9e-56 222.6 431 36.9
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 4.9e-56 222.6 307 43.0
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 6.4e-56 222.2 401 37.7
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 8.3e-56 221.9 419 38.2
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 8.3e-56 221.9 406 38.2
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.8e-55 220.7 415 37.3
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.8e-55 220.7 383 38.6
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.8e-55 220.7 388 38.7
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.4e-55 220.3 420 37.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 2.4e-55 220.3 424 37.3
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 2.4e-55 220.3 274 44.2
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.2e-55 219.9 398 37.9
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.1e-55 219.5 424 37.5
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.1e-55 219.5 289 45.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 7.0e-55 218.8 291 44.0
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 7.0e-55 218.8 249 48.2
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 7.0e-55 218.8 380 40.0
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 9.2e-55 218.4 299 43.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 1.6e-54 217.6 429 35.7
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 2.7e-54 216.9 422 34.4
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 2.7e-54 216.9 286 43.0
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 3.5e-54 216.5 419 37.5
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 3.5e-54 216.5 408 37.0
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 6.0e-54 215.7 238 47.9
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.0e-54 215.7 422 36.5
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.0e-53 214.9 358 39.7
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.0e-53 214.9 394 37.3
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 1.7e-53 214.2 418 36.8
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 3.0e-53 213.4 237 49.8
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-52 211.5 243 48.1
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.5e-52 211.1 242 47.9
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 2.5e-52 210.3 259 46.7
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 7.3e-52 208.8 233 46.8
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.6e-51 207.6 291 41.6
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 3.6e-51 206.5 325 37.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 4.7e-51 206.1 230 44.8
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.8e-50 204.1 257 46.7
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 3.1e-50 203.4 232 45.7
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 5.2e-50 202.6 387 37.5
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 3.4e-49 199.9 355 35.8
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 5.8e-49 199.1 382 35.3
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 9.8e-49 198.4 352 36.6
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-47 194.5 368 36.4
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 5.4e-47 192.6 366 36.6
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 5.4e-47 192.6 368 36.1
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.5e-46 189.9 245 45.3
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 4.6e-46 189.5 296 40.2
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 6.0e-46 189.1 388 37.4
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.2e-43 181.4 362 37.0
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 5.2e-42 176.0 231 42.4
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 6.8e-42 175.6 252 41.3
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 4.4e-41 172.9 446 31.4
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 2.9e-40 170.2 227 43.6
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 6.4e-40 169.1 246 39.4
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 9.5e-36 155.2 386 29.8
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.2e-35 154.8 342 35.1
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.2e-35 154.8 253 37.9
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-34 151.8 234 38.0
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 1.1e-34 151.8 234 38.0
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 1.1e-34 151.8 252 37.3
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 2.4e-31 140.6 225 38.7
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 2.1e-30 137.5 355 33.2
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.9e-28 131.0 100 60.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.2e-27 128.3 260 37.3
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.1e-27 127.5 114 55.3
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.8e-27 127.1 96 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 4.7e-27 126.3 411 26.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 1.1e-26 125.2 369 27.1
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.3e-24 118.2 173 38.7
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 6.0e-22 109.4 106 50.9
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 4.3e-20 103.2 208 35.1
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.3e-19 101.7 258 32.6
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.4e-15 87.4 85 45.9
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 2.9e-08 63.9 78 46.2
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 6.4e-08 62.8 73 45.2
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.1e-07 62.0 52 48.1
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.2e-07 60.5 41 65.9
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.2e-07 60.1 166 33.7
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 9.3e-07 58.9 44 61.4
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 1.6e-06 58.2 222 28.4


User provided reference genes

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