Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0279750 Oryza sativa ssp. japonica HOM05D001004 ORTHO05D000653 5.5e-30 133.7 68 100.0
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 8.8e-12 73.2 64 60.9
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 1.3e-10 69.3 64 57.8
CsaV3_5G014630 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.8e-10 68.2 67 53.7
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.8e-10 68.2 64 57.8
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.1e-09 66.2 64 57.8
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.4e-09 65.9 67 52.2
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 4.1e-09 64.3 65 50.8
ClCG06G013020 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.4e-09 63.9 65 47.7
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 5.4e-09 63.9 64 48.4
Sed0002681 Sechium edule HOM05D001004 ORTHO05D000653 9.1e-09 63.2 66 51.5
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 1.6e-08 62.4 64 45.3
Zm00001eb267010 Zea mays HOM05D007791 ORTHO05D000653 2.0e-08 62.0 67 49.3
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 2.7e-08 61.6 65 46.2
ClCG07G000750 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.9e-08 60.5 68 48.5
MELO3C018347.2 Cucumis melo HOM05D001004 ORTHO05D000653 5.9e-08 60.5 68 47.1
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.7e-08 60.1 66 50.0
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 7.7e-08 60.1 66 50.0
ClCG04G001650 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.3e-07 59.3 65 44.6
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 48.4
Phvul.009G203600 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 48.4
Psat2g130960 Pisum sativum HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 51.6
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.7e-07 58.9 64 50.0
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 1.7e-07 58.9 64 48.4
ClCG07G000740 Citrullus lanatus HOM05D001004 ORTHO05D000653 2.3e-07 58.5 65 47.7
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.3e-07 58.5 65 50.8
Os01g0615100 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.3e-07 58.5 64 51.6
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.9e-07 58.2 64 46.9
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.9e-07 58.2 64 46.9
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.9e-07 58.2 64 46.9
Glyma.09G103800 Glycine max HOM05D001004 ORTHO05D000653 3.8e-07 57.8 64 45.3
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 3.8e-07 57.8 67 44.8
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.0e-07 57.4 64 48.4
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 5.0e-07 57.4 64 48.4
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 5.0e-07 57.4 64 43.8
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 5.0e-07 57.4 64 50.0
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.6e-07 57.0 68 44.1
Zm00001eb355980 Zea mays HOM05D007791 ORTHO05D000653 6.6e-07 57.0 65 52.3
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 8.6e-07 56.6 64 45.3
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 8.6e-07 56.6 69 43.5
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 8.6e-07 56.6 64 43.8
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 8.6e-07 56.6 66 45.5
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 43.8
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 45.3
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 46.9
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 46.9
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.1e-06 56.2 71 47.9
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 1.5e-06 55.8 67 46.3
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 1.5e-06 55.8 67 46.3
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 43.8
DCAR_018459 Daucus carota HOM05D000077 ORTHO05D000552 1.5e-06 55.8 64 46.9
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 1.5e-06 55.8 64 46.9
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.5e-06 55.8 64 42.2
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 1.5e-06 55.8 64 42.2
EL10Ac5g10440 Beta vulgaris HOM05D001004 ORTHO05D000653 1.9e-06 55.5 65 41.5
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.9e-06 55.5 64 45.3
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.9e-06 55.5 67 43.3
Nn1g02639 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.9e-06 55.5 66 45.5
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 1.9e-06 55.5 64 42.2
Sabra05G0170000 Salix brachista HOM05D001004 ORTHO05D000653 1.9e-06 55.5 62 41.9
Sed0001107 Sechium edule HOM05D001004 ORTHO05D000653 1.9e-06 55.5 68 45.6
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 2.5e-06 55.1 64 40.6
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 2.5e-06 55.1 65 46.2
Potri.005G221000 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.5e-06 55.1 62 43.5
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 2.5e-06 55.1 64 42.2
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 2.5e-06 55.1 64 46.9
COL.COLO4_05581 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.3e-06 54.7 64 48.4
DCAR_011993 Daucus carota HOM05D001004 ORTHO05D000653 3.3e-06 54.7 67 44.8
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 3.3e-06 54.7 64 51.6
Os02g0124000 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 3.3e-06 54.7 70 50.0
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 4.2e-06 54.3 64 43.8
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 4.2e-06 54.3 64 46.9
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.2e-06 54.3 64 42.2
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.2e-06 54.3 64 42.2
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 4.2e-06 54.3 64 40.6
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 4.2e-06 54.3 64 40.6
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 4.2e-06 54.3 64 42.2
TPR.G6174 Trifolium pratense HOM05D001004 ORTHO05D000653 4.2e-06 54.3 67 41.8
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 5.5e-06 53.9 62 43.5
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 5.5e-06 53.9 64 42.2
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 5.5e-06 53.9 64 43.8
Sed0027486 Sechium edule HOM05D001004 ORTHO05D000653 5.5e-06 53.9 64 42.2
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 7.2e-06 53.5 70 44.3
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 7.2e-06 53.5 72 44.4
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 7.2e-06 53.5 64 45.3
Gohir.D11G134150 Gossypium hirsutum HOM05D001004 ORTHO05D000653 7.2e-06 53.5 68 44.1
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 7.2e-06 53.5 64 45.3
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 7.2e-06 53.5 68 39.7
FAN17G2232 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.5e-06 53.1 67 41.8
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 9.5e-06 53.1 64 42.2
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 9.5e-06 53.1 62 43.5
Solyc08g080630.4 Solanum lycopersicum HOM05D001004 ORTHO05D000653 9.5e-06 53.1 65 46.2
Sopen08g028940 Solanum pennellii HOM05D001004 ORTHO05D000653 9.5e-06 53.1 65 46.2
TPR.G31260 Trifolium pratense HOM05D001004 ORTHO05D000653 9.5e-06 53.1 64 40.6


User provided reference genes

Program Settings