Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0275900 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 5.2e-50 200.7 97 100.0
Os07g0120051 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 4.3e-12 74.7 69 62.3
Prupe.5G040300 Prunus persica HOM05D007142 ORTHO05D008983 3.1e-10 68.6 42 76.2
Lsat_1_v5_gn_3_16621 Lactuca sativa HOM05D007142 ORTHO05D008983 6.9e-10 67.4 42 73.8
Lj4g0022330 Lotus japonicus HOM05D007142 ORTHO05D008983 6.9e-10 67.4 42 78.6
Os11g0220300 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 6.9e-10 67.4 48 70.8
VMungo0251G3176 Vigna mungo HOM05D007142 ORTHO05D008983 6.9e-10 67.4 42 76.2
Actinidia25952 Actinidia chinensis HOM05D007142 ORTHO05D008983 9.0e-10 67.0 42 76.2
ClCG10G001790 Citrullus lanatus HOM05D007142 ORTHO05D008983 9.0e-10 67.0 42 73.8
TAR629G1364 Trochodendron aralioides HOM05D007142 ORTHO05D008983 9.0e-10 67.0 42 73.8
GSVIVG01013184001 Vitis vinifera HOM05D007142 ORTHO05D008983 9.0e-10 67.0 42 73.8
ECA246G1460 Erigeron canadensis HOM05D007142 ORTHO05D008983 1.2e-09 66.6 42 69.0
Glyma.17G154151 Glycine max HOM05D007142 ORTHO05D008983 1.2e-09 66.6 42 73.8
Potri.003G089900 Populus trichocarpa HOM05D007142 ORTHO05D008983 1.2e-09 66.6 42 73.8
Sabra03G0059800 Salix brachista HOM05D007142 ORTHO05D008983 1.2e-09 66.6 42 73.8
CiPaw.11G091400 Carya illinoinensis HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 71.4
Duzib205G0350 Durio zibethinus HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 71.4
Lalb_Chr09g0329501 Lupinus albus HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 73.8
Nn6g33627 Nelumbo nucifera HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 73.8
Nitab4.5_0003100g0010 Nicotiana tabacum HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 73.8
Nitab4.5_0014378g0020 Nicotiana tabacum HOM05D007142 ORTHO05D008983 1.5e-09 66.2 42 73.8
MD06G1031800 Malus domestica HOM05D007142 ORTHO05D008983 2.0e-09 65.9 42 71.4
SalBow4G2536 Salvia bowleyana HOM05D007142 ORTHO05D008983 2.0e-09 65.9 45 77.8
Zm00001eb090700 Zea mays HOM05D007142 ORTHO05D008983 2.0e-09 65.9 44 75.0
CsaV3_3G001880 Cucumis sativus L. HOM05D007142 ORTHO05D008983 2.6e-09 65.5 42 73.8
Atru.chr6.1752 Acer truncatum HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 71.4
BcaC05g27290 Brassica carinata HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 76.2
A09p33690 Brassica napus HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 76.2
C05p31960 Brassica napus HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 76.2
BolC5t31922H Brassica oleracea HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 76.2
Haze_08264 Corylus avellana HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 71.4
Eucgr.D02183 Eucalyptus grandis HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 73.8
unitig_32.g11901 Utricularia gibba HOM05D007142 ORTHO05D008983 3.4e-09 65.1 42 71.4
BcaB07g32947 Brassica carinata HOM05D007142 ORTHO05D008983 4.5e-09 64.7 42 73.8
CAN.G201.17 Capsicum annuum HOM05D007142 ORTHO05D008983 4.5e-09 64.7 42 71.4
PSO339G0102 Papaver somniferum HOM05D007142 ORTHO05D008983 4.5e-09 64.7 42 71.4
PSO384G0274 Papaver somniferum HOM05D007142 ORTHO05D008983 4.5e-09 64.7 42 71.4
Sp1g28380 Schrenkiella parvula HOM05D007142 ORTHO05D008983 4.5e-09 64.7 42 76.2
Aqoxy3G02453 Aquilegia oxysepala HOM05D007142 ORTHO05D008983 5.9e-09 64.3 43 72.1
MELO3C013862.2 Cucumis melo HOM05D007142 ORTHO05D008983 5.9e-09 64.3 44 77.3
COL.COLO4_17070 Corchorus olitorius HOM05D007142 ORTHO05D008983 7.6e-09 63.9 42 71.4
Mapoly0005s0008 Marchantia polymorpha HOM05D007142 ORTHO05D008983 7.6e-09 63.9 44 75.0
Peaxi162Scf00603g00413 Petunia axillaris HOM05D007142 ORTHO05D008983 7.6e-09 63.9 42 71.4
Phvul.003G229700 Phaseolus vulgaris HOM05D007142 ORTHO05D008983 7.6e-09 63.9 42 71.4
BraA09t38918Z Brassica rapa HOM05D007142 ORTHO05D008983 1.0e-08 63.5 42 73.8
HanXRQChr17g0535721 Helianthus annuus HOM05D007142 ORTHO05D008983 1.0e-08 63.5 42 69.0
Manes.17G016003 Manihot esculenta HOM05D007142 ORTHO05D008983 1.0e-08 63.5 42 71.4
Thecc.03G230800 Theobroma cacao HOM05D007142 ORTHO05D008983 1.0e-08 63.5 42 69.0
Gohir.D08G178400 Gossypium hirsutum HOM05D007142 ORTHO05D008983 1.3e-08 63.2 42 69.0
MBI04_g22954_MAGBIO Magnolia biondii HOM05D007142 ORTHO05D008983 1.3e-08 63.2 44 70.5
Psat4g079200 Pisum sativum HOM05D007142 ORTHO05D008983 1.3e-08 63.2 42 71.4
PGR031G3753 Punica granatum HOM05D007142 ORTHO05D008983 1.3e-08 63.2 45 73.3
Sed0005643 Sechium edule HOM05D007142 ORTHO05D008983 1.3e-08 63.2 42 71.4
Thhalv10008641m.g Eutrema salsugineum HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 73.8
Gohir.A08G158100 Gossypium hirsutum HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 69.0
Gorai.004G186600 Gossypium raimondii HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 69.0
Solyc06g061090.3 Solanum lycopersicum HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 71.4
Sopen06g021290 Solanum pennellii HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 71.4
PGSC0003DMG400002104 Solanum tuberosum HOM05D007142 ORTHO05D008983 1.7e-08 62.8 42 71.4
Carub.0001s3093 Capsella rubella HOM05D007142 ORTHO05D008983 2.2e-08 62.4 42 76.2
Medtr4g098620 Medicago truncatula HOM05D007142 ORTHO05D008983 2.2e-08 62.4 42 69.0
DCAR_032211 Daucus carota HOM05D007142 ORTHO05D008983 2.9e-08 62.0 42 66.7
TPR.G28665 Trifolium pratense HOM05D007142 ORTHO05D008983 2.9e-08 62.0 42 69.0
AT1G32520 Arabidopsis thaliana HOM05D007142 ORTHO05D008983 3.8e-08 61.6 42 73.8
arahy.Tifrunner.gnm1.ann1.J3YA34 Arachis hypogaea HOM05D007142 ORTHO05D008983 3.8e-08 61.6 47 63.8
Lj2C242T12 Lonicera japonica HOM05D007142 ORTHO05D008983 3.8e-08 61.6 42 66.7
EL10Ac5g12171 Beta vulgaris HOM05D007142 ORTHO05D008983 5.0e-08 61.2 42 66.7
Dinv28934 Davidia involucrata HOM05D007142 ORTHO05D008983 5.0e-08 61.2 45 68.9
Migut.F01892 Erythranthe guttata HOM05D007142 ORTHO05D008983 5.0e-08 61.2 45 71.1
TWI15G0113 Tripterygium wilfordii HOM05D007142 ORTHO05D008983 5.0e-08 61.2 42 76.2
AagrBONN_evm.TU.Sc2ySwM_362.655 Anthoceros agrestis HOM05D007142 ORTHO05D008983 6.5e-08 60.8 45 71.1
CDE11G1210 Ceratophyllum demersum HOM05D007142 ORTHO05D008983 6.5e-08 60.8 42 64.3
AUR62018753 Chenopodium quinoa HOM05D007142 ORTHO05D008983 6.5e-08 60.8 42 66.7
QL12p006204 Quercus lobata HOM05D007142 ORTHO05D008983 6.5e-08 60.8 42 64.3
AUR62007246 Chenopodium quinoa HOM05D007142 ORTHO05D008983 8.5e-08 60.5 42 66.7
AL1G46770 Arabidopsis lyrata HOM05D007142 ORTHO05D008983 1.1e-07 60.1 42 73.8
MSTRG.9125 Avicennia marina HOM05D007142 ORTHO05D008983 1.1e-07 60.1 46 67.4
Cpa.g.sc665.3 Carica papaya HOM05D007142 ORTHO05D008983 1.1e-07 60.1 46 67.4
Ciclev10032530m.g Citrus clementina HOM05D007142 ORTHO05D008983 1.1e-07 60.1 44 65.9
FvH4_5g21680 Fragaria vesca HOM05D007142 ORTHO05D008983 1.1e-07 60.1 44 70.5
FAN18G0559 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.1e-07 60.1 44 70.5
Cc08_g02450 Coffea canephora HOM05D007142 ORTHO05D000161 1.4e-07 59.7 47 66.0
FAN13G1057 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.4e-07 59.7 44 70.5
RcHm_v2.0_Chr7g0209181 Rosa chinensis HOM05D007142 ORTHO05D008983 1.4e-07 59.7 44 70.5
vmacro00342 Vaccinium macrocarpon HOM05D007142 ORTHO05D008983 1.4e-07 59.7 44 68.2
Sc10g0005600 Simmondsia chinensis HOM05D007142 ORTHO05D008983 1.9e-07 59.3 42 64.3
CARHR031970 Cardamine hirsuta HOM05D007142 ORTHO05D008983 2.5e-07 58.9 42 71.4
SGA_v2.0_scaffold4519G54498 Striga asiatica HOM05D007142 ORTHO05D008983 2.5e-07 58.9 43 72.1
Ah.12g054590 Amaranthus hybridus HOM05D007142 ORTHO05D008983 3.2e-07 58.5 43 67.4
ATR0049G055 Amborella trichopoda HOM05D007142 ORTHO05D008983 3.2e-07 58.5 47 61.7
THA.LOC104807961 Tarenaya hassleriana HOM05D007142 ORTHO05D008983 3.2e-07 58.5 50 60.0
HPP92_004467 Vanilla planifolia HOM05D007142 ORTHO05D008983 3.2e-07 58.5 45 62.2
CANSAT21G2079 Cannabis sativa HOM05D007142 ORTHO05D008983 4.2e-07 58.2 49 63.3
FAN08G2513 Fragaria x ananassa HOM05D007142 ORTHO05D008983 4.2e-07 58.2 44 68.2
Rhsim11G0012900 Rhododendron simsii HOM05D007142 ORTHO05D008983 4.2e-07 58.2 44 65.9
SMO367G0110 Selaginella moellendorffii HOM05D007142 ORTHO05D008983 4.2e-07 58.2 40 65.0
HPP92_004488 Vanilla planifolia HOM05D007142 ORTHO05D008983 5.5e-07 57.8 45 62.2
Aa31LG2G13430 Aethionema arabicum HOM05D007142 ORTHO05D008983 1.2e-06 56.6 45 66.7
SEGI_34411 Sequoiadendron giganteum HOM05D007142 ORTHO05D008983 1.6e-06 56.2 48 64.6


User provided reference genes

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