Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0275800 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 5.1e-131 471.1 236 100.0
Os11g0270000 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 1.0e-27 127.9 249 37.8
Os11g0269900 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 2.2e-25 120.2 231 38.1
Os11g0274700 Oryza sativa ssp. japonica HOM05D000013 ORTHO05D294294 2.7e-23 113.2 235 35.7
Eucgr.H00183 Eucalyptus grandis HOM05D001680 ORTHO05D001596 3.5e-15 86.3 227 32.6
ECA240G2121 Erigeron canadensis HOM05D001680 ORTHO05D001596 2.3e-14 83.6 227 28.6
TWI73G0979 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 6.6e-14 82.0 225 28.0
MBI06_g15768_MAGBIO Magnolia biondii HOM05D001680 ORTHO05D001596 1.1e-13 81.3 236 30.1
TAR624G0040 Trochodendron aralioides HOM05D001680 ORTHO05D001596 2.5e-13 80.1 221 27.6
Os05g0529200 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 4.3e-13 79.3 236 28.4
HanXRQChr03g0092231 Helianthus annuus HOM05D001680 ORTHO05D001596 5.6e-13 79.0 227 26.4
CsaV3_3G012330 Cucumis sativus L. HOM05D001680 ORTHO05D001596 1.2e-12 77.8 238 27.7
Migut.N00249 Erythranthe guttata HOM05D001680 ORTHO05D001596 1.6e-12 77.4 234 29.5
Thecc.04G250500 Theobroma cacao HOM05D001680 ORTHO05D001596 2.1e-12 77.0 226 29.6
CiPaw.15G086700 Carya illinoinensis HOM05D001680 ORTHO05D001596 2.8e-12 76.6 220 28.2
SalBow3G2541 Salvia bowleyana HOM05D001680 ORTHO05D001596 4.7e-12 75.9 231 29.0
Sc06g0007420 Simmondsia chinensis HOM05D001680 ORTHO05D001596 4.7e-12 75.9 225 26.7
Nn1g04492 Nelumbo nucifera HOM05D001680 ORTHO05D001596 6.2e-12 75.5 224 28.1
Sc13g0005160 Simmondsia chinensis HOM05D001680 ORTHO05D001596 6.2e-12 75.5 226 27.4
Ca_07245_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 8.1e-12 75.1 223 28.3
MELO3C006442.2 Cucumis melo HOM05D001680 ORTHO05D001596 8.1e-12 75.1 238 26.5
Eucgr.J00044 Eucalyptus grandis HOM05D001680 ORTHO05D001596 1.1e-11 74.7 217 26.7
Actinidia04463 Actinidia chinensis HOM05D001680 ORTHO05D001596 1.8e-11 73.9 226 26.5
HanXRQChr14g0458271 Helianthus annuus HOM05D001680 ORTHO05D001596 1.8e-11 73.9 218 28.9
CiPaw.15G086600 Carya illinoinensis HOM05D001680 ORTHO05D001596 2.3e-11 73.6 220 27.7
MELO3C006443.2 Cucumis melo HOM05D001680 ORTHO05D001596 3.1e-11 73.2 225 25.8
Lj6g0011787 Lotus japonicus HOM05D001680 ORTHO05D001596 3.1e-11 73.2 225 29.3
Zm00001eb293360 Zea mays HOM05D001680 ORTHO05D001596 3.1e-11 73.2 235 27.2
SalBow5G1653 Salvia bowleyana HOM05D001680 ORTHO05D001596 4.0e-11 72.8 218 24.3
TAR486G0003 Trochodendron aralioides HOM05D001680 ORTHO05D001596 4.0e-11 72.8 224 29.0
RcHm_v2.0_Chr1g0366321 Rosa chinensis HOM05D001680 ORTHO05D001596 5.2e-11 72.4 222 27.0
Sed0026719 Sechium edule HOM05D001680 ORTHO05D001596 5.2e-11 72.4 225 26.7
TAR486G0005 Trochodendron aralioides HOM05D001680 ORTHO05D001596 5.2e-11 72.4 224 29.5
Oeu058881.1 Olea europaea HOM05D001680 ORTHO05D001596 6.8e-11 72.0 228 27.2
PSO782G0904 Papaver somniferum HOM05D001680 ORTHO05D001596 8.9e-11 71.6 239 28.0
Potri.008G164900 Populus trichocarpa HOM05D001680 ORTHO05D001596 8.9e-11 71.6 226 30.1
SalBow5G3246 Salvia bowleyana HOM05D001680 ORTHO05D001596 8.9e-11 71.6 218 24.3
THA.LOC104805984 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 8.9e-11 71.6 220 26.8
Sed0024318 Sechium edule HOM05D001680 ORTHO05D001596 1.2e-10 71.2 235 25.1
COL.COLO4_15831 Corchorus olitorius HOM05D001680 ORTHO05D001596 1.5e-10 70.9 226 27.9
Psat3g180640 Pisum sativum HOM05D001680 ORTHO05D001596 1.5e-10 70.9 229 29.3
Sed0008562 Sechium edule HOM05D001680 ORTHO05D001596 1.5e-10 70.9 225 28.9
A09p04280 Brassica napus HOM05D001680 ORTHO05D001596 2.0e-10 70.5 230 26.1
BraA09t36065Z Brassica rapa HOM05D001680 ORTHO05D001596 2.0e-10 70.5 230 26.1
PGR031G0448 Punica granatum HOM05D001680 ORTHO05D001596 2.0e-10 70.5 225 28.9
Actinidia29215 Actinidia chinensis HOM05D001680 ORTHO05D001596 2.6e-10 70.1 220 25.9
Manes.03G167000 Manihot esculenta HOM05D001680 ORTHO05D001596 2.6e-10 70.1 225 29.3
PGR044G0512 Punica granatum HOM05D001680 ORTHO05D001596 2.6e-10 70.1 216 25.9
Potri.010G073700 Populus trichocarpa HOM05D001680 ORTHO05D001596 3.4e-10 69.7 226 30.1
Sabra10G0160400 Salix brachista HOM05D001680 ORTHO05D001596 3.4e-10 69.7 216 27.8
THA.LOC104808610 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 5.8e-10 68.9 227 28.6
DCAR_027659 Daucus carota HOM05D001680 ORTHO05D001596 7.6e-10 68.6 221 27.1
Manes.10G032900 Manihot esculenta HOM05D001680 ORTHO05D001596 7.6e-10 68.6 229 24.9
Manes.15G038400 Manihot esculenta HOM05D001680 ORTHO05D001596 7.6e-10 68.6 225 27.1
Phvul.006G189000 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 7.6e-10 68.6 225 27.1
Potri.010G207800 Populus trichocarpa HOM05D001680 ORTHO05D001596 7.6e-10 68.6 216 27.8
ClCG05G004430 Citrullus lanatus HOM05D001680 ORTHO05D001596 9.9e-10 68.2 224 26.8
Haze_11336 Corylus avellana HOM05D001680 ORTHO05D001596 9.9e-10 68.2 224 26.3
PSO675G7413 Papaver somniferum HOM05D001680 ORTHO05D001596 9.9e-10 68.2 222 27.5
Lsat_1_v5_gn_2_117781 Lactuca sativa HOM05D001680 ORTHO05D001596 1.7e-09 67.4 228 26.8
A02p13250 Brassica napus HOM05D001680 ORTHO05D001596 2.2e-09 67.0 227 24.7
C09p04530 Brassica napus HOM05D001680 ORTHO05D001596 2.2e-09 67.0 227 25.1
BraA02t06382Z Brassica rapa HOM05D001680 ORTHO05D001596 2.2e-09 67.0 227 24.7
MD07G1194300 Malus domestica HOM05D001680 ORTHO05D001596 2.2e-09 67.0 232 26.3
Nn1g04489 Nelumbo nucifera HOM05D001680 ORTHO05D001596 2.2e-09 67.0 243 27.2
PGR044G2295 Punica granatum HOM05D001680 ORTHO05D001596 2.2e-09 67.0 216 26.9
BolC9t53382H Brassica oleracea HOM05D001680 ORTHO05D001596 2.9e-09 66.6 227 25.1
Cc00_g34910 Coffea canephora HOM05D001680 ORTHO05D001596 2.9e-09 66.6 188 29.8
Dinv44657 Davidia involucrata HOM05D001680 ORTHO05D001596 2.9e-09 66.6 225 25.3
BcaB05g24121 Brassica carinata HOM05D001680 ORTHO05D001596 3.7e-09 66.2 220 25.5
CsaV3_3G012340 Cucumis sativus L. HOM05D001680 ORTHO05D001596 3.7e-09 66.2 225 25.3
Eucgr.J00043 Eucalyptus grandis HOM05D001680 ORTHO05D001596 3.7e-09 66.2 213 25.4
PSO541G0221 Papaver somniferum HOM05D001680 ORTHO05D001596 3.7e-09 66.2 222 27.9
BcaC04g23801 Brassica carinata HOM05D001680 ORTHO05D001596 4.9e-09 65.9 225 24.9
COL.COLO4_14965 Corchorus olitorius HOM05D001680 ORTHO05D001596 4.9e-09 65.9 220 27.7
PGR044G0149 Punica granatum HOM05D001680 ORTHO05D001596 4.9e-09 65.9 216 25.5
QL06p016681 Quercus lobata HOM05D001680 ORTHO05D001596 4.9e-09 65.9 226 27.0
THA.LOC104819142 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 4.9e-09 65.9 220 23.2
BcaB04g19544 Brassica carinata HOM05D001680 ORTHO05D001596 6.4e-09 65.5 227 24.7
BcaC03g14708 Brassica carinata HOM05D001680 ORTHO05D001596 6.4e-09 65.5 227 23.8
C02p21430 Brassica napus HOM05D001680 ORTHO05D001596 6.4e-09 65.5 227 23.8
BolC2t08281H Brassica oleracea HOM05D001680 ORTHO05D001596 6.4e-09 65.5 227 23.8
CiPaw.02G182600 Carya illinoinensis HOM05D001680 ORTHO05D001596 6.4e-09 65.5 220 26.4
DCAR_027295 Daucus carota HOM05D001680 ORTHO05D001596 6.4e-09 65.5 225 27.1
Os01g0205600 Oryza sativa ssp. japonica HOM05D001680 ORTHO05D001596 6.4e-09 65.5 232 27.2
SHI00688 Sapria himalayana HOM05D001680 ORTHO05D001596 6.4e-09 65.5 225 26.7
Cc06_g19450 Coffea canephora HOM05D001680 ORTHO05D001596 8.4e-09 65.1 132 32.6
MD01G1124100 Malus domestica HOM05D001680 ORTHO05D001596 8.4e-09 65.1 232 26.7
MD01G1124200 Malus domestica HOM05D001680 ORTHO05D001596 8.4e-09 65.1 232 25.9
BcaB04g19539 Brassica carinata HOM05D001680 ORTHO05D001596 1.1e-08 64.7 227 25.6
Cfa008349 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.1e-08 64.7 225 25.8
TWI38G0919 Tripterygium wilfordii HOM05D001680 ORTHO05D001596 1.1e-08 64.7 222 26.6
Atru.chr12.502 Acer truncatum HOM05D001680 ORTHO05D001596 1.9e-08 63.9 223 26.5
Sp5g20440 Schrenkiella parvula HOM05D001680 ORTHO05D001596 2.4e-08 63.5 227 25.1
THA.LOC104823834 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 2.4e-08 63.5 219 24.2
Ca_07236_v3 Cicer arietinum L. HOM05D001680 ORTHO05D001596 4.1e-08 62.8 228 27.2
Glyma.18G288900 Glycine max HOM05D001680 ORTHO05D001596 4.1e-08 62.8 219 28.8
AT1G65520 Arabidopsis thaliana HOM05D001680 ORTHO05D001596 7.1e-08 62.0 227 25.6
COL.COLO4_14966 Corchorus olitorius HOM05D001680 ORTHO05D001596 7.1e-08 62.0 223 24.2
Glyma.10G007900 Glycine max HOM05D001680 ORTHO05D001596 9.2e-08 61.6 225 28.0
Phvul.008G013200 Phaseolus vulgaris HOM05D001680 ORTHO05D001596 9.2e-08 61.6 216 26.9
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.2e-07 61.2 250 24.4
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.2e-07 61.2 250 24.4
Carub.0002s1134 Capsella rubella HOM05D001680 ORTHO05D001596 1.2e-07 61.2 219 24.7
Psat3g180720 Pisum sativum HOM05D001680 ORTHO05D001596 1.6e-07 60.8 225 27.1
Thecc.10G047000 Theobroma cacao HOM05D001680 ORTHO05D001596 1.6e-07 60.8 223 25.6
Zm00001eb338180 Zea mays HOM05D001680 ORTHO05D001596 1.6e-07 60.8 223 27.4
Gohir.A05G301200 Gossypium hirsutum HOM05D001680 ORTHO05D001596 2.1e-07 60.5 223 24.2
Duzib114G0501 Durio zibethinus HOM05D001680 ORTHO05D001596 2.7e-07 60.1 223 24.7
THA.LOC104805679 Tarenaya hassleriana HOM05D001680 ORTHO05D001596 2.7e-07 60.1 215 23.7
Medtr7g024300 Medicago truncatula HOM05D001680 ORTHO05D001596 3.5e-07 59.7 222 27.5
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 3.5e-07 59.7 229 24.0
VMungo1383G2118 Vigna mungo HOM05D001680 ORTHO05D001596 3.5e-07 59.7 222 27.0
Cc02_g29550 Coffea canephora HOM05D001680 ORTHO05D001596 7.8e-07 58.5 221 25.8
COL.COLO4_15830 Corchorus olitorius HOM05D001680 ORTHO05D001596 1.0e-06 58.2 201 24.4
MELO3C025448.2 Cucumis melo HOM05D001680 ORTHO05D001596 1.0e-06 58.2 225 20.9
Zm00001eb120380 Zea mays HOM05D001680 ORTHO05D001596 1.0e-06 58.2 235 27.2
FAN22G0336 Fragaria x ananassa HOM05D001680 ORTHO05D001596 1.3e-06 57.8 189 28.0
Gohir.D05G300900 Gossypium hirsutum HOM05D001680 ORTHO05D001596 1.3e-06 57.8 223 23.8
AUR62040960 Chenopodium quinoa HOM05D001680 ORTHO05D001596 1.7e-06 57.4 241 26.1
Migut.L00377 Erythranthe guttata HOM05D001680 ORTHO05D001596 2.3e-06 57.0 234 22.2
Prupe.1G034900 Prunus persica HOM05D001680 ORTHO05D001596 3.0e-06 56.6 225 26.7
CsaV3_5G026420 Cucumis sativus L. HOM05D001680 ORTHO05D001596 3.9e-06 56.2 224 22.3
Gorai.009G318900 Gossypium raimondii HOM05D001680 ORTHO05D001596 3.9e-06 56.2 223 23.3


User provided reference genes

Program Settings