Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 1.6e-42 175.6 84 100.0
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 6.2e-23 110.5 83 63.9
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 1.1e-16 89.7 55 61.8
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 3.3e-16 88.2 57 64.9
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 7.3e-16 87.0 75 54.7
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.2e-15 86.3 59 61.0
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 2.1e-15 85.5 55 61.8
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.1e-15 85.5 83 48.2
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 2.1e-15 85.5 64 56.2
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 2.1e-15 85.5 64 56.2
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 2.8e-15 85.1 63 58.7
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.8e-15 85.1 55 61.8
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 2.8e-15 85.1 55 61.8
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 4.7e-15 84.3 77 51.9
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.2e-15 84.0 49 67.3
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 8.1e-15 83.6 55 61.8
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 8.1e-15 83.6 56 60.7
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 1.4e-14 82.8 63 57.1
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 1.4e-14 82.8 55 63.6
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.4e-14 82.8 55 60.0
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.4e-14 82.8 55 60.0
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.8e-14 82.4 57 59.6
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 2.4e-14 82.0 68 51.5
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 3.1e-14 81.6 68 54.4
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 3.1e-14 81.6 56 58.9
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 3.1e-14 81.6 56 58.9
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.0e-14 81.3 51 64.7
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 4.0e-14 81.3 77 54.5
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 5.2e-14 80.9 77 54.5
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.2e-14 80.9 55 60.0
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 5.2e-14 80.9 55 60.0
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 6.8e-14 80.5 60 55.0
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 6.8e-14 80.5 60 55.0
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 8.9e-14 80.1 56 58.9
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 1.5e-13 79.3 71 52.1
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.5e-13 79.3 50 64.0
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 1.5e-13 79.3 52 61.5
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.0e-13 79.0 58 62.1
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 2.0e-13 79.0 55 58.2
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 2.0e-13 79.0 68 50.0
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 3.4e-13 78.2 52 63.5
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 3.4e-13 78.2 55 54.5
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 3.4e-13 78.2 55 58.2
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 3.4e-13 78.2 59 54.2
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 4.4e-13 77.8 59 59.3
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 4.4e-13 77.8 55 54.5
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 4.4e-13 77.8 55 54.5
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 4.4e-13 77.8 59 59.3
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 5.8e-13 77.4 59 59.3
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 7.6e-13 77.0 62 54.8
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 9.9e-13 76.6 55 58.2
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 9.9e-13 76.6 76 50.0
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 1.3e-12 76.3 59 57.6
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 1.3e-12 76.3 59 59.3
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 1.3e-12 76.3 58 60.3
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 1.7e-12 75.9 59 57.6
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.7e-12 75.9 55 54.5
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 2.2e-12 75.5 82 46.3
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 2.2e-12 75.5 68 50.0
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.9e-12 75.1 77 51.9
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 2.9e-12 75.1 59 57.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 2.9e-12 75.1 59 57.6
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 3.8e-12 74.7 82 47.6
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 3.8e-12 74.7 65 53.8
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 6.4e-12 73.9 78 46.2
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 8.4e-12 73.6 58 58.6
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 8.4e-12 73.6 51 58.8
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 8.4e-12 73.6 55 52.7
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 8.4e-12 73.6 55 52.7
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.1e-11 73.2 82 46.3
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 1.1e-11 73.2 55 52.7
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 1.4e-11 72.8 83 47.0
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 2.4e-11 72.0 55 50.9
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.1e-11 71.2 51 62.7
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 5.4e-11 70.9 77 45.5
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 7.1e-11 70.5 55 60.0
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 9.2e-11 70.1 55 50.9
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 9.2e-11 70.1 75 46.7
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 1.2e-10 69.7 77 44.2
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 2.7e-10 68.6 76 46.1
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 7.8e-10 67.0 52 55.8
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 7.8e-10 67.0 55 52.7
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.0e-09 66.6 53 54.7
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.3e-09 66.2 55 54.5
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 2.3e-09 65.5 53 52.8
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 3.0e-09 65.1 55 49.1
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 5.1e-09 64.3 68 47.1
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 6.6e-09 63.9 53 54.7
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 3.3e-08 61.6 40 62.5
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 3.3e-08 61.6 40 62.5
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 7.3e-08 60.5 43 48.8
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 4.7e-07 57.8 40 60.0
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.1e-06 55.1 40 55.0
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 4.0e-06 54.7 104 30.8
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 9.0e-06 53.5 35 57.1


User provided reference genes

Program Settings