Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 3.5e-132 475.3 311 100.0
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.1e-80 302.8 269 71.7
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.2e-52 211.1 292 45.2
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.6e-52 209.5 257 49.0
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 4.0e-51 206.1 256 53.5
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 4.0e-51 206.1 200 54.5
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.3e-49 201.1 207 55.6
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 1.7e-49 200.7 276 44.2
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.9e-49 199.9 272 45.6
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 2.9e-49 199.9 184 58.7
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.9e-49 199.9 272 44.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.7e-49 199.5 205 52.2
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.7e-49 199.5 268 44.0
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 4.9e-49 199.1 275 45.1
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 6.4e-49 198.7 206 53.9
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 8.3e-49 198.4 206 53.9
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.9e-48 197.2 249 46.6
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 1.9e-48 197.2 272 44.1
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 3.2e-48 196.4 297 49.8
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 4.1e-48 196.1 206 52.9
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 4.1e-48 196.1 206 52.4
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 4.1e-48 196.1 206 53.4
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 5.4e-48 195.7 206 52.4
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 7.1e-48 195.3 266 45.9
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 7.1e-48 195.3 207 53.6
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 2.1e-47 193.7 207 52.7
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.7e-47 193.4 265 44.5
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.7e-47 193.4 265 44.5
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 2.7e-47 193.4 266 49.6
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 3.5e-47 193.0 208 52.9
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 3.5e-47 193.0 276 44.2
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.6e-47 192.6 276 44.2
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 6.0e-47 192.2 302 41.4
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 1.0e-46 191.4 277 43.0
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.0e-46 191.4 263 44.5
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.0e-46 191.4 290 43.1
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 1.3e-46 191.0 206 53.9
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 1.7e-46 190.7 201 55.2
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 2.3e-46 190.3 206 51.5
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 2.3e-46 190.3 279 43.0
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 2.3e-46 190.3 272 48.9
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 2.3e-46 190.3 274 47.8
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 2.3e-46 190.3 200 52.5
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 3.0e-46 189.9 281 42.3
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 3.9e-46 189.5 274 43.8
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 5.1e-46 189.1 202 52.0
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 6.6e-46 188.7 254 44.9
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 6.6e-46 188.7 281 42.0
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 6.6e-46 188.7 271 49.1
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 8.6e-46 188.3 274 45.3
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 8.6e-46 188.3 285 43.2
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.1e-45 188.0 201 49.3
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.1e-45 188.0 273 43.2
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 1.5e-45 187.6 198 53.5
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 1.5e-45 187.6 299 42.5
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.9e-45 187.2 283 43.1
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 1.9e-45 187.2 209 52.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.9e-45 187.2 199 50.3
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 1.9e-45 187.2 207 51.7
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.5e-45 186.8 197 52.8
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 2.5e-45 186.8 286 43.0
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 3.3e-45 186.4 287 42.9
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 3.3e-45 186.4 207 51.2
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 4.3e-45 186.0 279 43.0
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 5.6e-45 185.7 201 48.8
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 5.6e-45 185.7 201 51.7
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 7.3e-45 185.3 185 55.7
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 1.6e-44 184.1 210 52.9
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 2.1e-44 183.7 286 42.3
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 2.1e-44 183.7 202 51.0
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 2.8e-44 183.3 209 51.7
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 1.1e-43 181.4 285 41.8
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 1.4e-43 181.0 285 43.5
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 1.4e-43 181.0 202 47.5
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 1.8e-43 180.6 273 42.5
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.8e-43 180.6 206 50.0
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 6.8e-43 178.7 183 53.0
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 7.6e-42 175.3 240 44.6
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 7.6e-42 175.3 201 50.2
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 7.6e-42 175.3 207 51.2
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 9.9e-42 174.9 207 49.8
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 9.9e-42 174.9 311 39.9
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 2.9e-41 173.3 210 50.0
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 6.4e-41 172.2 316 38.9
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 8.3e-41 171.8 183 50.8
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.4e-40 171.0 211 48.3
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 1.9e-40 170.6 288 41.0
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 2.4e-40 170.2 280 48.2
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 4.1e-40 169.5 200 50.0
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 5.4e-40 169.1 209 47.8
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.2e-39 167.9 285 48.4
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.6e-39 167.5 173 53.2
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.6e-39 167.5 286 45.5
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.6e-39 167.5 287 43.9
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 2.1e-39 167.2 275 41.5
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 2.1e-39 167.2 282 40.1
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 2.1e-39 167.2 286 48.3
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.5e-39 166.4 205 48.8
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.6e-39 166.0 201 47.8
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 7.8e-39 165.2 201 47.8
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 1.7e-38 164.1 250 40.8
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 5.1e-38 162.5 185 51.4
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 6.6e-38 162.2 277 39.4
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 6.6e-38 162.2 216 46.3
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 1.9e-37 160.6 204 51.0
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 8.1e-36 155.2 147 58.5
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 2.6e-34 150.2 199 45.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.4e-34 149.4 183 47.0
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 7.6e-34 148.7 283 42.0
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 2.9e-33 146.7 261 39.8
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.4e-33 145.6 274 36.9
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.2e-32 143.3 309 43.0
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 4.6e-31 139.4 123 55.3
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 7.8e-31 138.7 124 58.9
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 3.0e-30 136.7 213 41.8
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 6.6e-30 135.6 114 60.5
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 6.6e-30 135.6 267 39.3
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 8.7e-30 135.2 231 44.2
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 1.9e-29 134.0 156 48.7
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.5e-29 133.7 198 45.5
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 9.0e-27 125.2 121 54.5
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 1.5e-26 124.4 119 52.1
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.3e-22 111.3 151 44.4
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 2.3e-22 110.5 176 44.9
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 5.1e-22 109.4 173 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.9e-21 107.5 201 38.8
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 2.8e-20 103.6 283 36.7
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 6.2e-20 102.4 192 37.0
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 6.2e-20 102.4 192 37.0
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 3.4e-18 96.7 272 32.4
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.7e-17 94.4 208 35.6
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 5.6e-13 79.3 114 42.1
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 4.8e-12 76.3 67 55.2
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 5.3e-11 72.8 62 58.1
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 1.0e-09 68.6 106 44.3
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 2.9e-09 67.0 160 34.4


User provided reference genes

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