Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.5e-267 923.7 458 100.0
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 2.2e-151 539.7 445 61.3
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.1e-133 478.4 445 55.7
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 8.0e-133 478.0 446 55.4
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.5e-131 473.8 447 54.1
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.6e-131 473.0 445 53.9
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.7e-130 470.3 447 53.5
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.7e-130 470.3 445 55.1
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.9e-130 469.5 446 54.3
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 3.7e-130 469.2 447 55.3
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 4.9e-130 468.8 445 55.5
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 8.3e-130 468.0 445 53.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.1e-129 467.6 444 54.1
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.4e-129 467.2 444 53.6
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.4e-129 467.2 445 53.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.2e-129 466.1 443 53.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.1e-129 465.7 445 53.0
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.2e-128 464.2 447 53.7
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.2e-128 464.2 447 53.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.2e-128 464.2 445 53.7
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-128 464.2 445 53.0
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 2.0e-128 463.4 446 53.1
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.5e-128 462.6 446 54.3
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 3.5e-128 462.6 445 52.8
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.9e-128 461.8 447 53.5
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.0e-127 461.1 445 52.8
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.3e-127 460.7 447 52.6
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 1.3e-127 460.7 480 51.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.7e-127 460.3 445 53.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.7e-127 460.3 445 53.5
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.3e-127 459.9 445 53.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.0e-127 459.5 457 51.2
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 5.0e-127 458.8 445 51.7
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 6.6e-127 458.4 443 53.5
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.5e-126 457.2 446 52.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 3.3e-126 456.1 446 51.8
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 4.3e-126 455.7 446 53.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.2e-125 454.1 445 50.8
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.1e-125 453.4 429 53.8
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 2.3e-124 449.9 445 51.2
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.0e-124 449.1 445 52.1
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.2e-124 448.7 447 52.6
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.9e-124 448.0 447 52.3
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.5e-123 447.2 490 48.0
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.0e-123 446.8 464 51.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-122 443.7 445 51.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.2e-122 443.4 445 52.4
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.2e-122 443.4 445 50.1
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.9e-122 443.0 447 50.1
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 4.9e-122 442.2 445 51.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.4e-121 439.9 445 50.8
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 5.4e-121 438.7 447 50.6
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.2e-120 437.6 447 50.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 1.2e-120 437.6 447 50.1
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.0e-120 436.8 442 52.9
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 3.5e-120 436.0 449 51.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.6e-120 435.6 445 52.4
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 6.0e-120 435.3 447 49.7
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.0e-119 434.5 445 51.2
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.7e-119 433.7 448 52.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.7e-119 433.7 445 51.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.0e-119 433.0 447 50.6
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.1e-118 431.0 445 51.7
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 3.3e-118 429.5 450 50.4
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.3e-118 429.1 459 50.5
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 5.6e-118 428.7 446 51.1
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 9.5e-118 427.9 444 49.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-117 427.6 442 52.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.2e-117 427.6 442 52.0
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 1.2e-117 427.6 448 51.1
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 1.6e-117 427.2 445 51.7
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.6e-117 427.2 448 48.9
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 2.1e-117 426.8 447 49.9
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 8.1e-117 424.9 443 52.1
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 8.1e-117 424.9 443 52.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 8.1e-117 424.9 448 48.9
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.3e-116 423.3 445 49.2
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.5e-115 420.6 459 49.2
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.5e-115 420.6 443 49.4
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 2.0e-115 420.2 443 49.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 7.5e-115 418.3 419 52.5
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.7e-114 417.2 445 49.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 2.9e-114 416.4 445 50.1
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.7e-114 416.0 443 49.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.1e-113 411.8 443 49.2
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.0e-111 407.9 443 47.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 1.0e-111 407.9 440 48.9
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.3e-111 407.5 446 48.4
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 5.1e-111 405.6 441 48.1
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.3e-110 402.9 442 46.8
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.6e-110 402.1 368 56.8
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.8e-109 399.8 450 50.2
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 5.2e-108 395.6 402 51.2
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 4.4e-107 392.5 419 49.2
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 3.8e-106 389.4 368 54.9
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.4e-106 388.7 438 48.9
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 3.2e-105 386.3 384 52.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.6e-103 378.6 384 52.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.9e-102 377.1 438 47.5
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 5.6e-102 375.6 443 46.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.8e-101 373.2 445 46.5
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 8.1e-101 371.7 384 49.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 4.0e-100 369.4 441 46.9
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 4.0e-100 369.4 441 46.9
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 4.0e-100 369.4 441 46.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.2e-97 359.4 366 52.5
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 9.3e-97 358.2 385 48.3
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.3e-95 354.4 441 44.7
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.3e-93 347.8 440 44.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.6e-93 347.4 317 56.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.8e-92 344.0 414 47.1
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 2.4e-92 343.6 382 47.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.0e-92 341.7 443 43.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.2e-91 341.3 424 45.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 8.4e-82 308.5 441 39.2
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 3.2e-81 306.6 425 41.6
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 4.6e-80 302.8 441 39.9
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.9e-76 288.9 435 38.4
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.7e-74 284.3 229 61.6
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 3.8e-74 283.1 439 39.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-73 281.6 311 47.6
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.9e-73 280.8 310 47.1
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 2.8e-69 266.9 357 43.1
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.6e-64 251.1 442 38.0
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.5e-59 233.0 187 59.4
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.7e-58 231.1 245 50.2
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 5.0e-58 229.6 479 33.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 2.2e-53 214.2 526 29.5
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 5.0e-50 203.0 308 40.6
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.6e-48 198.0 235 46.8
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.3e-47 194.1 207 50.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.6e-38 164.1 144 56.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.1e-36 155.6 144 51.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.1e-33 148.7 495 29.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.7e-32 144.1 159 46.5
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 3.5e-27 127.1 98 55.1
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.8e-16 90.9 89 50.6
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 6.1e-16 89.7 69 56.5
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-14 85.5 92 54.3
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-11 75.1 67 50.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.0e-10 72.4 335 25.4


User provided reference genes

Program Settings