Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.7e-268 928.7 443 100.0
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 1.9e-110 403.7 450 50.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 5.6e-91 339.0 444 42.3
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.6e-91 339.0 456 43.9
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.6e-90 337.4 449 43.7
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 3.6e-90 336.3 445 43.6
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 4.0e-89 332.8 445 42.7
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.2e-88 331.3 445 42.7
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 1.5e-88 330.9 445 42.5
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 4.5e-88 329.3 445 42.5
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.7e-87 327.4 445 43.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.2e-87 327.0 444 42.1
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 4.9e-87 325.9 446 42.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.9e-86 323.9 449 42.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.2e-86 323.2 443 42.2
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 5.4e-86 322.4 445 42.2
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.2e-85 321.2 446 41.9
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 1.2e-85 321.2 445 42.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.6e-85 320.9 436 43.1
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.6e-85 320.9 445 42.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 2.7e-85 320.1 447 41.8
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 7.9e-85 318.5 436 42.4
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 1.0e-84 318.2 444 41.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.3e-84 317.8 444 42.1
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.8e-84 317.4 445 42.2
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 5.1e-84 315.8 444 41.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.1e-83 314.7 445 41.3
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 1.1e-83 314.7 445 41.8
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 1.9e-83 313.9 429 42.7
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 3.3e-83 313.2 446 42.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 5.6e-83 312.4 445 41.1
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 7.4e-83 312.0 448 41.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 7.4e-83 312.0 445 41.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.1e-82 310.5 462 39.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.8e-82 310.1 441 41.7
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 2.8e-82 310.1 474 38.6
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 2.8e-82 310.1 441 42.0
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 2.8e-82 310.1 455 40.7
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.8e-82 309.3 442 41.4
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 6.2e-82 308.9 446 39.9
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 8.1e-82 308.5 441 41.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 8.1e-82 308.5 446 40.6
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.4e-81 307.8 446 39.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.4e-81 307.8 460 41.5
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.8e-81 307.4 442 41.2
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.8e-81 307.4 440 41.4
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.4e-81 307.0 442 41.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.1e-81 306.6 447 41.6
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.1e-81 306.6 445 40.9
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.0e-81 305.1 443 40.9
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.2e-80 304.7 441 42.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.2e-80 304.7 448 39.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.5e-80 304.3 448 40.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.6e-80 302.0 447 39.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.3e-79 301.2 445 40.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 2.2e-79 300.4 440 39.5
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.9e-79 300.1 462 40.0
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.8e-79 299.7 445 38.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 4.9e-79 299.3 446 39.7
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 4.9e-79 299.3 446 38.1
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.1e-78 298.1 440 39.5
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.9e-78 297.4 445 41.3
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.6e-77 294.3 445 39.6
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.6e-77 292.7 440 40.5
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 6.0e-77 292.4 456 39.3
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 6.0e-77 292.4 443 39.7
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.0e-76 291.6 445 38.7
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.3e-76 291.2 449 39.0
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 1.3e-76 291.2 447 39.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.3e-76 291.2 447 38.7
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.9e-76 289.7 490 38.2
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.7e-76 288.9 446 38.8
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.7e-76 288.5 445 38.7
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 8.7e-76 288.5 419 41.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 8.7e-76 288.5 445 39.1
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.1e-75 288.1 442 40.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.5e-75 287.7 451 39.7
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.9e-75 287.3 444 39.9
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.9e-75 287.3 398 40.7
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.3e-75 286.2 440 38.9
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.3e-75 286.2 461 39.3
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 7.4e-75 285.4 443 39.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.1e-74 283.9 440 40.9
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.1e-74 283.9 440 40.9
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.8e-73 280.8 446 40.1
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.8e-73 280.8 446 40.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.8e-73 280.8 440 38.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.2e-71 273.9 448 38.8
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.9e-70 270.8 456 38.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 7.1e-70 268.9 445 38.4
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 7.1e-70 268.9 445 38.4
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 7.1e-70 268.9 445 38.4
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 3.5e-69 266.5 440 36.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.5e-69 266.5 438 36.8
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.3e-68 263.8 363 43.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.9e-68 263.1 368 42.7
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 5.1e-68 262.7 428 37.9
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.9e-67 260.8 368 42.4
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 2.5e-67 260.4 377 41.4
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.3e-66 258.1 419 37.5
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 3.7e-66 256.5 373 41.6
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.8e-66 256.1 439 38.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.1e-65 253.4 444 37.6
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 6.9e-65 252.3 438 37.4
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.7e-64 248.8 417 38.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.0e-63 248.4 372 38.7
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.2e-62 243.0 373 38.9
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.2e-62 243.0 428 36.4
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 3.9e-60 236.5 442 35.1
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-58 231.1 313 42.8
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.1e-57 228.4 339 40.4
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.4e-57 228.0 448 35.0
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.2e-56 224.9 440 35.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.1e-54 218.4 317 41.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.4e-54 218.0 372 36.8
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 9.4e-54 215.3 426 33.6
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.2e-53 214.9 416 34.4
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.4e-52 211.5 312 40.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.8e-52 208.8 443 34.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 4.5e-48 196.4 446 32.5
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.2e-46 189.9 421 32.5
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 2.0e-43 181.0 233 42.1
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.6e-43 180.6 242 43.0
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.0e-39 168.7 446 30.5
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.3e-39 168.3 355 32.4
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.2e-32 145.2 312 32.7
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.6e-32 144.8 523 25.0
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.9e-31 140.6 226 38.1
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 3.8e-31 140.2 481 27.0
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 6.5e-31 139.4 219 37.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.1e-29 134.4 190 40.0
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.3e-26 122.9 143 44.8
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.3e-15 87.8 126 40.5
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-14 85.5 147 38.1
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 4.3e-14 83.6 137 38.7
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 7.5e-11 72.8 98 37.8


User provided reference genes

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