Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 2.1e-129 466.1 299 100.0
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 2.1e-97 359.8 227 79.3
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 5.5e-82 308.5 233 65.2
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 1.5e-79 300.4 230 63.9
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 4.4e-79 298.9 230 64.3
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 7.4e-79 298.1 232 65.5
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 2.8e-78 296.2 228 64.5
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 2.8e-78 296.2 226 65.5
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.1e-77 294.3 230 63.9
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 1.4e-77 293.9 239 62.8
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 1.8e-77 293.5 226 66.8
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 2.4e-77 293.1 230 63.5
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 4.5e-76 288.9 233 63.1
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 7.7e-76 288.1 229 63.8
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 1.0e-75 287.7 231 62.8
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.3e-75 287.3 235 62.1
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 2.9e-75 286.2 223 63.2
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 2.9e-75 286.2 221 62.0
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 3.8e-75 285.8 228 63.6
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 6.5e-75 285.0 227 61.7
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.9e-74 283.5 233 62.2
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 1.9e-74 283.5 230 63.0
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 2.5e-74 283.1 225 64.9
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 3.2e-74 282.7 221 62.0
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.2e-74 282.3 222 63.1
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 5.5e-74 282.0 225 64.9
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 7.2e-74 281.6 223 62.3
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 7.2e-74 281.6 225 63.1
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 7.2e-74 281.6 233 63.9
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 9.4e-74 281.2 227 64.3
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.2e-73 280.8 223 63.2
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.6e-73 280.4 223 61.9
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 1.6e-73 280.4 221 61.1
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 2.7e-73 279.6 199 67.3
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.7e-73 279.6 236 60.6
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 2.7e-73 279.6 221 61.1
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 3.6e-73 279.3 225 62.7
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 4.7e-73 278.9 236 59.7
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 4.7e-73 278.9 225 62.7
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 6.1e-73 278.5 221 60.6
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 8.0e-73 278.1 225 62.2
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.0e-72 277.7 233 60.9
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.4e-72 277.3 236 59.3
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.4e-72 277.3 231 63.6
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 1.8e-72 276.9 221 61.1
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.8e-72 276.9 206 65.0
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 2.3e-72 276.6 225 61.8
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 2.3e-72 276.6 226 61.5
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 3.0e-72 276.2 229 62.4
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 3.9e-72 275.8 237 59.1
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 3.9e-72 275.8 236 61.4
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 8.8e-72 274.6 237 59.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.8e-72 274.6 225 60.0
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.1e-71 274.2 232 59.9
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 1.1e-71 274.2 229 61.6
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 1.1e-71 274.2 228 61.4
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 1.5e-71 273.9 226 61.9
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 1.5e-71 273.9 243 61.3
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 1.5e-71 273.9 260 55.0
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.0e-71 273.5 221 60.6
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 2.0e-71 273.5 232 62.1
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 2.6e-71 273.1 216 63.0
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 3.3e-71 272.7 222 64.0
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 3.3e-71 272.7 225 60.4
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 4.4e-71 272.3 239 60.7
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 5.7e-71 271.9 226 59.3
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 9.7e-71 271.2 223 59.6
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 9.7e-71 271.2 237 58.2
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 9.7e-71 271.2 222 59.5
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 9.7e-71 271.2 221 59.3
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 1.3e-70 270.8 234 63.2
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 1.3e-70 270.8 230 61.7
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 1.3e-70 270.8 230 62.2
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 1.7e-70 270.4 225 59.1
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.8e-70 269.6 230 61.3
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 3.7e-70 269.2 230 61.7
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 4.8e-70 268.9 229 58.5
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 8.2e-70 268.1 227 61.2
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.4e-69 267.3 222 59.5
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 1.8e-69 266.9 231 61.9
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 4.1e-69 265.8 241 60.2
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 1.6e-68 263.8 215 60.9
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 2.6e-68 263.1 262 55.0
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 4.5e-68 262.3 228 59.2
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 1.7e-67 260.4 219 58.0
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 2.9e-67 259.6 230 60.0
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 4.2e-66 255.8 228 57.9
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 1.6e-65 253.8 213 59.2
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.2e-64 248.8 193 64.8
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 3.3e-63 246.1 231 56.3
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 1.3e-62 244.2 212 59.4
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 3.5e-60 236.1 235 54.5
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.0e-59 234.6 250 54.4
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.5e-58 230.7 250 53.6
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 3.6e-57 226.1 230 57.0
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 4.7e-57 225.7 173 61.8
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 5.2e-56 222.2 231 54.5
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 6.8e-56 221.9 230 53.5
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 5.7e-55 218.8 245 50.2
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 1.3e-51 207.6 184 56.5
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 4.2e-50 202.6 242 46.7
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 6.8e-48 195.3 236 48.7
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 3.9e-43 179.5 206 48.1
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 9.5e-42 174.9 227 43.2
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 4.7e-41 172.6 202 49.0
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 4.0e-40 169.5 141 61.0
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 2.9e-38 163.3 124 67.7
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 8.3e-38 161.8 134 61.9
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 2.4e-37 160.2 123 65.0
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.7e-36 156.8 237 39.7
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 4.6e-36 156.0 146 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.7e-35 154.1 216 40.3
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.1e-28 130.6 106 63.2
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 3.0e-27 126.7 104 61.5
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 1.6e-25 120.9 110 56.4
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 2.3e-24 117.1 179 38.5
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 6.8e-24 115.5 136 50.7
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 4.1e-21 106.3 95 52.6
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 2.7e-20 103.6 87 60.9
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 1.0e-19 101.7 227 34.4
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.6e-19 99.0 103 55.3
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.5e-18 97.8 86 58.1
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.9e-18 97.4 86 58.1
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 2.5e-18 97.1 89 55.1
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.3e-18 96.7 77 64.9
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 2.9e-14 83.6 233 29.2
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 2.3e-11 73.9 182 30.2
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 8.7e-11 72.0 109 42.2
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 2.6e-07 60.5 97 43.3
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 7.6e-07 58.9 54 55.6


User provided reference genes

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