Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 5.3e-78 294.3 149 100.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 2.7e-61 238.8 143 80.4
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 7.3e-59 230.7 143 78.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.2e-58 229.9 148 73.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.4e-54 216.5 148 67.6
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.4e-54 215.7 148 67.6
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.4e-54 215.7 148 68.2
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.1e-54 214.9 148 68.9
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 67.6
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 66.9
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.0e-54 214.2 148 66.9
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 148 67.6
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 9.2e-54 213.8 148 67.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.6e-53 211.5 148 68.2
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.0e-53 211.1 147 66.7
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 65.5
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.7e-52 209.5 148 66.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.3e-52 209.1 148 66.9
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.0e-52 208.8 148 66.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 3.0e-52 208.8 148 66.2
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.9e-52 208.4 149 65.1
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.9e-52 208.4 148 64.9
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.0e-52 208.0 147 66.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 68.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 8.6e-52 207.2 148 66.2
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.6e-52 207.2 145 66.9
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 8.6e-52 207.2 148 64.9
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 66.2
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 63.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 67.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 67.3
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 65.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.3e-51 205.3 141 66.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 4.3e-51 204.9 148 64.2
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 5.6e-51 204.5 148 64.9
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.6e-50 203.0 148 62.8
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.6e-50 203.0 147 64.6
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.1e-50 202.6 147 63.3
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 2.8e-50 202.2 141 66.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 148 62.2
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 63.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 8.0e-50 200.7 147 65.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.1e-49 200.3 148 63.5
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 63.9
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 64.6
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 64.6
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 64.6
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.8e-49 199.5 150 65.3
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.3e-49 199.1 147 62.6
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 63.9
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 60.5
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 60.5
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 63.3
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 62.6
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 60.5
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 62.6
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 5.2e-49 198.0 142 64.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.2e-49 198.0 142 64.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.2e-49 198.0 142 64.8
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 61.9
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 63.9
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.8e-49 197.6 147 60.5
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-49 197.6 147 60.5
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 6.8e-49 197.6 147 64.6
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.8e-49 197.6 142 64.8
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 6.8e-49 197.6 146 64.4
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 8.9e-49 197.2 147 60.5
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 8.9e-49 197.2 148 64.2
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 8.9e-49 197.2 141 64.5
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.2e-48 196.8 140 65.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 63.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 62.6
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.2e-48 196.8 143 63.6
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.2e-48 196.8 143 63.6
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 64.6
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-48 196.4 142 64.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.4e-48 195.3 146 63.7
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.4e-48 195.3 148 62.2
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.4e-48 194.9 147 60.5
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 4.4e-48 194.9 147 61.9
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 7.5e-48 194.1 148 61.5
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.8e-48 193.7 144 63.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 9.8e-48 193.7 159 57.2
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 58.5
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.3e-47 193.4 148 60.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.7e-47 193.0 147 60.5
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.7e-47 193.0 149 63.1
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 61.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 63.9
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 6.4e-47 191.0 148 60.8
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 8.3e-47 190.7 148 62.2
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.1e-46 190.3 148 60.1
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.4e-46 189.1 147 60.5
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.4e-46 189.1 143 60.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.2e-46 188.7 144 61.1
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 5.4e-46 188.0 154 57.8
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 7.0e-46 187.6 159 55.3
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 7.8e-45 184.1 148 58.1
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.0e-44 183.7 157 55.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.3e-44 183.3 142 59.2
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.7e-44 183.0 147 58.5
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.7e-44 183.0 147 57.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.7e-44 183.0 147 57.1
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.0e-44 181.4 148 61.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.1e-43 180.3 132 65.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.1e-43 180.3 147 58.5
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.5e-43 179.1 158 55.1
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.5e-43 179.1 168 53.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 4.3e-43 178.3 147 57.8
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.3e-43 178.3 147 57.1
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 9.5e-43 177.2 144 59.7
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.6e-42 176.4 191 49.2
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.6e-42 176.4 217 44.2
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.6e-42 175.3 147 57.1
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 4.7e-42 174.9 148 56.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 4.7e-42 174.9 147 56.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 6.2e-42 174.5 147 56.5
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.1e-41 173.7 147 55.1
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.4e-41 173.3 147 54.4
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.4e-41 173.3 148 56.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-41 172.9 147 55.8
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.8e-41 172.9 147 56.5
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 5.2e-41 171.4 147 56.5
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 8.9e-41 170.6 147 55.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.5e-40 169.9 181 49.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.6e-40 169.1 148 52.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.6e-40 169.1 148 52.7
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.8e-40 167.9 140 52.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 9.9e-40 167.2 140 55.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 9.9e-40 167.2 147 54.4
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-39 166.4 141 53.9
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-39 166.4 141 53.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-39 166.4 141 53.9
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.9e-39 164.9 142 54.9
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 6.4e-39 164.5 147 53.1
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-38 163.7 147 53.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.6e-34 149.8 105 66.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.6e-34 149.8 105 66.7
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.6e-32 142.5 148 51.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 7.6e-32 141.0 104 61.5
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 4.9e-31 138.3 119 55.5
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.1e-30 137.1 105 59.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.2e-29 133.7 135 53.3
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.2e-29 133.7 135 53.3
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-29 133.3 147 46.3
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 89 65.2
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 131 51.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.3e-28 130.2 99 60.6
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.9e-27 126.3 89 64.0
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 3.3e-27 125.6 139 46.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.6e-27 124.8 89 66.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 9.6e-27 124.0 103 57.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 2.4e-25 119.4 88 59.1
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.7e-23 113.2 143 40.6
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.2e-22 108.6 136 39.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-21 107.1 86 53.5
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 4.6e-21 105.1 82 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 7.8e-21 104.4 130 36.9
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 5.1e-20 101.7 148 34.5
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.9e-19 99.8 147 39.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.5e-19 99.4 103 45.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-16 90.5 128 32.0
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 9.9e-16 87.4 72 59.7
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.7e-15 86.7 102 40.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 6.4e-15 84.7 107 35.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 139 30.2
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 5.6e-11 71.6 148 28.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-10 70.5 87 41.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.1e-10 69.7 81 48.1
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.1e-10 69.7 127 26.8
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.8e-10 68.6 82 48.8
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.6e-08 61.2 84 42.9
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 9.9e-08 60.8 39 66.7
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 3.2e-06 55.8 126 25.4
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.1e-06 54.7 46 47.8


User provided reference genes

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