Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0250600 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 1.3e-94 349.7 174 100.0
Os11g0253100 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 2.8e-62 242.3 169 72.8
Os11g0252400 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 1.4e-56 223.4 169 66.3
Os11g0251200 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 8.2e-54 214.2 169 64.5
Os11g0251400 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 4.8e-46 188.3 176 58.0
FAN26G1698 Fragaria x ananassa HOM05D000264 ORTHO05D000152 2.9e-14 82.8 178 35.4
Duzib177G0309 Durio zibethinus HOM05D000264 ORTHO05D000152 1.8e-13 80.1 175 33.1
FvH4_1g18590 Fragaria vesca HOM05D000264 ORTHO05D000152 1.8e-13 80.1 178 34.8
FAN19G0588 Fragaria x ananassa HOM05D000264 ORTHO05D000152 1.8e-13 80.1 178 34.8
RcHm_v2.0_Chr2g0109381 Rosa chinensis HOM05D000264 ORTHO05D000152 3.2e-13 79.3 178 33.1
FAN28G1654 Fragaria x ananassa HOM05D000264 ORTHO05D000152 4.1e-13 79.0 178 34.3
CANSAT78G1487 Cannabis sativa HOM05D000264 ORTHO05D000152 1.2e-12 77.4 161 34.8
Prupe.4G145100 Prunus persica HOM05D000264 ORTHO05D000152 7.8e-12 74.7 179 32.4
BolC3t16390H Brassica oleracea HOM05D000264 ORTHO05D000152 1.7e-11 73.6 163 33.1
Prupe.4G144500 Prunus persica HOM05D000264 ORTHO05D000152 2.3e-11 73.2 175 33.7
Eucgr.D01254 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.0e-11 72.8 171 32.7
Thhalv10020630m.g Eutrema salsugineum HOM05D000264 ORTHO05D000152 3.0e-11 72.8 166 34.3
CAN.G694.51 Capsicum annuum HOM05D000264 ORTHO05D000152 3.9e-11 72.4 163 28.8
BolC3t16381H Brassica oleracea HOM05D000264 ORTHO05D000152 5.0e-11 72.0 163 33.1
Dinv29921 Davidia involucrata HOM05D000264 ORTHO05D000152 5.0e-11 72.0 167 29.9
ECA233G3568 Erigeron canadensis HOM05D000264 ORTHO05D000152 5.0e-11 72.0 166 33.1
MD04G1021000 Malus domestica HOM05D000264 ORTHO05D000152 5.0e-11 72.0 171 30.4
vmacro19094 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 5.0e-11 72.0 169 35.5
Hma1.2p1_1193F.1_g265570 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 6.6e-11 71.6 171 32.2
C03p41010 Brassica napus HOM05D000264 ORTHO05D000152 8.6e-11 71.2 164 34.1
RcHm_v2.0_Chr5g0027121 Rosa chinensis HOM05D000264 ORTHO05D000152 8.6e-11 71.2 177 30.5
TAR627G0592 Trochodendron aralioides HOM05D000264 ORTHO05D000152 8.6e-11 71.2 161 32.3
CANSAT78G0525 Cannabis sativa HOM05D000264 ORTHO05D000152 1.1e-10 70.9 172 32.0
FAN21G2481 Fragaria x ananassa HOM05D000264 ORTHO05D000152 1.1e-10 70.9 177 32.8
THA.LOC104801174 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 1.1e-10 70.9 189 29.1
Eucgr.D01529 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.5e-10 70.5 162 32.7
QL03p027806 Quercus lobata HOM05D000264 ORTHO05D000152 1.9e-10 70.1 163 33.7
BcaC09g47787 Brassica carinata HOM05D000264 ORTHO05D000152 2.5e-10 69.7 162 31.5
Dinv14086 Davidia involucrata HOM05D000096 ORTHO05D000045 2.5e-10 69.7 170 30.0
QL03p028282 Quercus lobata HOM05D000264 ORTHO05D000152 2.5e-10 69.7 160 31.2
RcHm_v2.0_Chr5g0027141 Rosa chinensis HOM05D000264 ORTHO05D000152 2.5e-10 69.7 181 30.9
BcaB04g21355 Brassica carinata HOM05D000264 ORTHO05D000152 4.3e-10 68.9 162 30.9
BolC1t05734H Brassica oleracea HOM05D000264 ORTHO05D000152 4.3e-10 68.9 162 31.5
FvH4_3g16160 Fragaria vesca HOM05D000264 ORTHO05D000152 4.3e-10 68.9 171 33.3
Ciclev10004701m.g Citrus clementina HOM05D000264 ORTHO05D000152 5.6e-10 68.6 154 33.8
MBI02_g18415_MAGBIO Magnolia biondii HOM05D000264 ORTHO05D000152 7.3e-10 68.2 165 30.9
Thecc.04G245400 Theobroma cacao HOM05D000264 ORTHO05D000152 7.3e-10 68.2 204 30.4
Dinv29924 Davidia involucrata HOM05D000264 ORTHO05D000152 9.5e-10 67.8 170 29.4
Mapoly0035s0003 Marchantia polymorpha HOM05D011467 ORTHO05D014661 9.5e-10 67.8 159 30.2
Mapoly0035s0012 Marchantia polymorpha HOM05D011467 ORTHO05D014661 9.5e-10 67.8 159 30.2
AUR62035354 Chenopodium quinoa HOM05D000264 ORTHO05D000152 1.6e-09 67.0 190 28.4
CANSAT78G2263 Cannabis sativa HOM05D000264 ORTHO05D000152 2.1e-09 66.6 161 31.7
ECA233G4031 Erigeron canadensis HOM05D000264 ORTHO05D000152 2.1e-09 66.6 160 31.9
Lj6A655T45 Lonicera japonica HOM05D000264 ORTHO05D000152 2.1e-09 66.6 162 31.5
Mapoly0035s0002 Marchantia polymorpha HOM05D011467 ORTHO05D014661 2.1e-09 66.6 159 28.9
Mapoly0035s0007 Marchantia polymorpha HOM05D011467 ORTHO05D014661 2.1e-09 66.6 159 28.9
Ciclev10004518m.g Citrus clementina HOM05D000264 ORTHO05D000152 2.8e-09 66.2 120 32.5
Gohir.D04G184600 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.6e-09 65.9 147 29.9
Mapoly0035s0005 Marchantia polymorpha HOM05D011467 ORTHO05D014661 4.7e-09 65.5 159 28.9
TAR627G0379 Trochodendron aralioides HOM05D000264 ORTHO05D000152 4.7e-09 65.5 173 30.6
Gorai.012G178700 Gossypium raimondii HOM05D000264 ORTHO05D000152 6.2e-09 65.1 147 30.6
Os11g0435800 Oryza sativa ssp. japonica HOM05D000264 ORTHO05D000152 6.2e-09 65.1 156 29.5
ECA233G1129 Erigeron canadensis HOM05D000264 ORTHO05D000152 8.0e-09 64.7 153 31.4
Gohir.D04G183800 Gossypium hirsutum HOM05D000264 ORTHO05D000152 8.0e-09 64.7 146 30.1
Gorai.012G177900 Gossypium raimondii HOM05D000264 ORTHO05D000152 8.0e-09 64.7 148 31.1
CANSAT78G1322 Cannabis sativa HOM05D000264 ORTHO05D000152 1.1e-08 64.3 147 35.4
CARHR004110 Cardamine hirsuta HOM05D000264 ORTHO05D000152 1.1e-08 64.3 187 26.7
Gorai.012G178600 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.1e-08 64.3 148 31.1
CANSAT78G0315 Cannabis sativa HOM05D000264 ORTHO05D000152 1.4e-08 63.9 171 25.7
Eucgr.D01277 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.4e-08 63.9 171 30.4
CARHR002990 Cardamine hirsuta HOM05D000264 ORTHO05D000152 1.8e-08 63.5 175 26.3
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 1.8e-08 63.5 173 27.7
Gorai.012G179400 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-08 63.5 144 29.2
Gorai.012G179600 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-08 63.5 147 30.6
Gorai.012G180100 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-08 63.5 147 29.9
Gorai.012G180200 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.8e-08 63.5 147 30.6
Hma1.2p1_1193F.1_g265660 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 1.8e-08 63.5 165 29.1
Thecc.04G245500 Theobroma cacao HOM05D000264 ORTHO05D000152 1.8e-08 63.5 143 34.3
Hma1.2p1_1193F.1_g265650 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 2.3e-08 63.2 171 29.8
QL02p075547 Quercus lobata HOM05D000264 ORTHO05D000152 2.3e-08 63.2 160 31.9
C03p40960 Brassica napus HOM05D000264 ORTHO05D000152 3.1e-08 62.8 163 30.7
Gohir.D04G184300 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.1e-08 62.8 148 30.4
Manes.09G150800 Manihot esculenta HOM05D000264 ORTHO05D000152 3.1e-08 62.8 171 30.4
Prupe.4G144800 Prunus persica HOM05D000264 ORTHO05D000152 3.1e-08 62.8 184 28.8
Carub.0007s2784 Capsella rubella HOM05D000264 ORTHO05D000152 4.0e-08 62.4 159 32.1
Gohir.A04G140700 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.0e-08 62.4 144 30.6
Gohir.D04G184575 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.0e-08 62.4 148 31.1
Gohir.D04G184900 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.0e-08 62.4 147 29.9
Gohir.A04G140732 Gossypium hirsutum HOM05D000264 ORTHO05D000152 5.2e-08 62.0 147 30.6
Gorai.012G177700 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.2e-08 62.0 146 30.8
Gorai.012G177800 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.2e-08 62.0 145 31.0
RcHm_v2.0_Chr5g0027111 Rosa chinensis HOM05D000264 ORTHO05D000152 5.2e-08 62.0 181 29.3
Dinv44626 Davidia involucrata HOM05D000264 ORTHO05D000152 6.8e-08 61.6 162 29.6
QL03p070735 Quercus lobata HOM05D000264 ORTHO05D000152 6.8e-08 61.6 160 30.6
Ah.12g062530 Amaranthus hybridus HOM05D000264 ORTHO05D000152 8.9e-08 61.2 187 27.8
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 8.9e-08 61.2 159 30.2
BcaC01g04362 Brassica carinata HOM05D000264 ORTHO05D000152 1.2e-07 60.8 157 31.8
BcaC09g49234 Brassica carinata HOM05D000264 ORTHO05D000152 1.5e-07 60.5 162 29.0
Eucgr.D01257 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.5e-07 60.5 176 29.0
Gohir.D04G184200 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.5e-07 60.5 147 30.6
Gohir.D04G185100 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.5e-07 60.5 147 30.6
Gorai.012G177600 Gossypium raimondii HOM05D000264 ORTHO05D000152 1.5e-07 60.5 148 29.7
AT4G03490 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 2.0e-07 60.1 202 24.8
BcaB04g21356 Brassica carinata HOM05D000264 ORTHO05D000152 2.0e-07 60.1 157 28.0
Lj5A330T28 Lonicera japonica HOM05D000264 ORTHO05D000152 2.0e-07 60.1 167 29.3
Prupe.3G135200 Prunus persica HOM05D000264 ORTHO05D000152 2.0e-07 60.1 173 28.3
Prupe.4G211100 Prunus persica HOM05D000264 ORTHO05D000152 2.0e-07 60.1 175 29.1
PGR142G2411 Punica granatum HOM05D000097 ORTHO05D000041 2.0e-07 60.1 129 31.0
THA.LOC104803112 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 2.0e-07 60.1 135 31.1
CSS0040861 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 2.6e-07 59.7 174 26.4
Duzib177G0874 Durio zibethinus HOM05D000264 ORTHO05D000152 2.6e-07 59.7 177 29.9
Gohir.D04G184100 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.4e-07 59.3 141 29.8
Gohir.D04G184750 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.4e-07 59.3 148 29.7
Gohir.D04G185250 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.4e-07 59.3 148 29.7
Gorai.012G176900 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.4e-07 59.3 144 29.9
Gorai.012G177500 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.4e-07 59.3 146 29.5
Gorai.012G178300 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.4e-07 59.3 146 30.1
Gorai.012G179000 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.4e-07 59.3 148 29.7
Prupe.3G154000 Prunus persica HOM05D000264 ORTHO05D000152 3.4e-07 59.3 174 26.4
Ciclev10004436m.g Citrus clementina HOM05D000097 ORTHO05D000041 4.4e-07 58.9 146 28.8
Gohir.D04G184400 Gossypium hirsutum HOM05D000264 ORTHO05D000152 4.4e-07 58.9 147 28.6
Gorai.012G178000 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.4e-07 58.9 147 28.6
Hma1.2p1_1276F.1_g272230 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 4.4e-07 58.9 171 28.7
RcHm_v2.0_Chr2g0109301 Rosa chinensis HOM05D000264 ORTHO05D000152 4.4e-07 58.9 173 27.7
CARHR251860 Cardamine hirsuta HOM05D000264 ORTHO05D000152 5.8e-07 58.5 202 25.7
Ciclev10006407m.g Citrus clementina HOM05D000264 ORTHO05D000152 5.8e-07 58.5 169 28.4
COL.COLO4_10465 Corchorus olitorius HOM05D000264 ORTHO05D000152 5.8e-07 58.5 166 26.5
Eucgr.L01065 Eucalyptus grandis HOM05D000264 ORTHO05D000152 5.8e-07 58.5 171 31.0
QL03p027958 Quercus lobata HOM05D000264 ORTHO05D000152 5.8e-07 58.5 167 30.5
Gohir.A04G140800 Gossypium hirsutum HOM05D000264 ORTHO05D000152 7.5e-07 58.2 147 29.3
Eucgr.D01530 Eucalyptus grandis HOM05D000264 ORTHO05D000152 9.8e-07 57.8 176 29.0
Eucgr.H02695 Eucalyptus grandis HOM05D000264 ORTHO05D000152 9.8e-07 57.8 170 30.0
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 9.8e-07 57.8 153 32.7
DCAR_029609 Daucus carota HOM05D000264 ORTHO05D000152 1.3e-06 57.4 170 27.1
Eucgr.D01270 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.3e-06 57.4 161 30.4
Eucgr.D01522 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.3e-06 57.4 170 29.4
Eucgr.K00472 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.3e-06 57.4 144 32.6
Gohir.D04G184525 Gossypium hirsutum HOM05D000264 ORTHO05D000152 1.3e-06 57.4 146 30.1
Hma1.2p1_1193F.1_g265581 Hydrangea macrophylla HOM05D000264 ORTHO05D000152 1.3e-06 57.4 166 27.1
Thecc.05G278400 Theobroma cacao HOM05D000264 ORTHO05D000152 1.7e-06 57.0 164 31.1
arahy.Tifrunner.gnm1.ann1.98V0PV Arachis hypogaea HOM05D000992 ORTHO05D006704 2.2e-06 56.6 152 28.3
CANSAT78G2137 Cannabis sativa HOM05D000264 ORTHO05D000152 2.2e-06 56.6 136 32.4
AUR62017745 Chenopodium quinoa HOM05D007624 ORTHO05D010285 2.2e-06 56.6 148 31.1
DCAR_004395 Daucus carota HOM05D000264 ORTHO05D000152 2.2e-06 56.6 177 26.0
Eucgr.F00992 Eucalyptus grandis HOM05D000264 ORTHO05D000152 2.2e-06 56.6 136 30.1
Eucgr.K00050 Eucalyptus grandis HOM05D000264 ORTHO05D000152 2.2e-06 56.6 144 29.2
Thhalv10020325m.g Eutrema salsugineum HOM05D000454 ORTHO05D000591 2.2e-06 56.6 91 35.2
Lj5A329T14 Lonicera japonica HOM05D000264 ORTHO05D000152 2.2e-06 56.6 168 30.4
vmacro12288 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 2.2e-06 56.6 152 27.0
Dinv29918 Davidia involucrata HOM05D000264 ORTHO05D000152 2.9e-06 56.2 186 30.1
QL09p045542 Quercus lobata HOM05D000264 ORTHO05D000152 2.9e-06 56.2 154 31.8
Sc06g0005980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 2.9e-06 56.2 172 25.6
Actinidia38166 Actinidia chinensis HOM05D000097 ORTHO05D009673 3.7e-06 55.8 142 29.6
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 3.7e-06 55.8 159 27.0
Eucgr.D01250 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.7e-06 55.8 74 41.9
Eucgr.K00061 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.7e-06 55.8 145 29.7
Gohir.D04G184550 Gossypium hirsutum HOM05D000264 ORTHO05D000152 3.7e-06 55.8 136 30.1
Gorai.012G178500 Gossypium raimondii HOM05D000264 ORTHO05D000152 3.7e-06 55.8 136 30.1
PGR142G0855 Punica granatum HOM05D000264 ORTHO05D000152 3.7e-06 55.8 172 27.3
AT4G14390 Arabidopsis thaliana HOM05D000264 ORTHO05D000152 4.9e-06 55.5 168 27.4
CANSAT78G2268 Cannabis sativa HOM05D000264 ORTHO05D000152 4.9e-06 55.5 171 31.0
AUR62035892 Chenopodium quinoa HOM05D000264 ORTHO05D000152 4.9e-06 55.5 192 27.1
Gorai.012G179800 Gossypium raimondii HOM05D000264 ORTHO05D000152 4.9e-06 55.5 158 28.5
Sp3g07900 Schrenkiella parvula HOM05D000454 ORTHO05D000591 4.9e-06 55.5 91 35.2
Ah.08g219020 Amaranthus hybridus HOM05D000264 ORTHO05D000152 6.4e-06 55.1 176 25.0
MELO3C004399.2 Cucumis melo HOM05D000264 ORTHO05D000152 6.4e-06 55.1 72 37.5
Gohir.D04G184500 Gossypium hirsutum HOM05D000264 ORTHO05D000152 6.4e-06 55.1 147 29.3
Prupe.3G155300 Prunus persica HOM05D000264 ORTHO05D000152 6.4e-06 55.1 173 26.0
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 6.4e-06 55.1 160 28.8
FAN16G3628 Fragaria x ananassa HOM05D000264 ORTHO05D000152 8.3e-06 54.7 177 26.6
Lj5A330G31 Lonicera japonica HOM05D000264 ORTHO05D000152 8.3e-06 54.7 170 29.4
GSVIVG01020905001 Vitis vinifera HOM05D000264 ORTHO05D000152 8.3e-06 54.7 115 34.8


User provided reference genes

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