Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 0.0e+00 1132.1 603 100.0
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 6.8e-172 608.2 584 64.0
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 5.4e-137 492.3 403 68.2
Zm00001eb317370 Zea mays HOM05D019859 ORTHO05D008940 1.1e-100 371.7 310 65.8
Zm00001eb442140 Zea mays HOM05D019859 ORTHO05D008940 8.0e-72 275.8 232 66.4
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 9.5e-41 172.6 468 35.3
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 2.0e-30 138.3 643 28.0
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 3.4e-30 137.5 507 30.6
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 7.5e-30 136.3 475 30.9
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 2.2e-29 134.8 512 30.9
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 4.1e-28 130.6 531 30.7
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 5.4e-28 130.2 475 30.1
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 7.1e-28 129.8 477 29.6
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 6.0e-27 126.7 486 30.7
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 7.8e-27 126.3 498 28.1
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.0e-26 125.9 458 30.3
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.7e-26 125.2 485 29.3
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 2.3e-26 124.8 487 30.6
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.9e-25 121.7 481 29.7
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 2.5e-25 121.3 483 29.6
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 7.3e-25 119.8 490 29.0
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 7.3e-25 119.8 652 27.6
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 2.1e-24 118.2 479 29.0
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 2.8e-24 117.9 480 31.0
Zm00001eb065700 Zea mays HOM05D019859 ORTHO05D008940 2.8e-24 117.9 129 60.5
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 4.7e-24 117.1 627 27.4
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 6.2e-24 116.7 483 29.2
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 8.1e-24 116.3 491 28.1
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.1e-23 114.4 485 30.5
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 3.4e-22 110.9 491 28.3
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 5.8e-22 110.2 471 26.8
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 9.9e-22 109.4 497 27.8
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 4.9e-21 107.1 483 27.1
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 4.9e-21 107.1 476 28.2
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.4e-20 105.5 446 29.1
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.4e-20 105.5 483 27.1
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.9e-20 105.1 480 27.3
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 1.9e-20 105.1 477 30.2
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.4e-20 104.8 483 27.7
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 9.2e-20 102.8 561 27.6
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 1.2e-19 102.4 474 25.9
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 1.2e-19 102.4 568 26.6
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 1.2e-19 102.4 651 26.3
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 2.1e-19 101.7 464 29.7
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 2.1e-19 101.7 576 26.0
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.3e-18 99.0 475 26.1
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 2.3e-18 98.2 453 29.4
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 2.3e-18 98.2 577 26.9
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 3.3e-17 94.4 482 27.6
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 3.3e-17 94.4 474 26.8
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 4.3e-17 94.0 647 25.7
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 4.3e-17 94.0 647 25.7
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 5.6e-17 93.6 466 27.9
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 2.1e-16 91.7 403 27.3
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 2.1e-16 91.7 489 28.6
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.8e-16 91.3 623 25.4
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 6.2e-16 90.1 373 29.0
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.1e-15 89.4 495 27.7
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 1.4e-15 89.0 491 27.3
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 2.4e-15 88.2 475 28.6
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 4.0e-15 87.4 585 25.0
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 6.8e-15 86.7 459 26.8
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 8.9e-15 86.3 610 24.6
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 1.5e-14 85.5 626 26.8
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.5e-14 85.5 475 27.6
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.5e-14 85.5 476 25.8
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.4e-14 84.3 644 24.5
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 5.8e-14 83.6 475 28.2
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 7.6e-14 83.2 389 28.3
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.7e-13 82.0 463 26.1
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 4.9e-13 80.5 504 26.4
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 6.4e-13 80.1 512 24.4
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 1.9e-12 78.6 506 27.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 9.3e-12 76.3 367 28.3
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 9.3e-12 76.3 520 24.8
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 1.6e-11 75.5 619 22.9
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 2.1e-11 75.1 363 28.9
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 2.1e-11 75.1 486 27.6
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 6.0e-11 73.6 386 25.4
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.0e-10 72.8 500 24.6
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 1.3e-10 72.4 397 26.2
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 1.7e-10 72.0 593 24.6
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 5.1e-10 70.5 471 24.2
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 8.7e-10 69.7 106 39.6
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 1.1e-09 69.3 472 26.1
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.5e-09 68.9 379 23.2
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 4.3e-09 67.4 104 41.3
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 5.6e-09 67.0 168 32.1
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 1.6e-08 65.5 375 24.0
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 1.1e-07 62.8 108 38.0
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 1.1e-07 62.8 108 38.0
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.1e-07 62.8 577 24.6
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.4e-07 62.4 103 44.7
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.5e-06 58.9 111 36.0
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 1.5e-06 58.9 111 36.0
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 3.4e-06 57.8 119 32.8
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 3.4e-06 57.8 472 25.6
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 4.5e-06 57.4 569 25.3
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 9.9e-06 56.2 108 37.0


User provided reference genes

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