Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 0.0e+00 1125.9 577 100.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.1e-267 926.4 566 84.5
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.3e-217 759.2 553 71.2
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 5.1e-217 758.1 556 70.0
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.2e-215 753.4 555 70.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.1e-215 752.7 525 72.6
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 3.6e-215 751.9 525 72.6
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.1e-214 750.4 527 72.1
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.8e-214 749.6 527 72.1
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.0e-214 748.4 550 70.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.0e-214 748.4 525 72.0
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.2e-214 748.0 549 70.1
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 8.9e-214 747.3 524 72.5
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.9e-214 747.3 556 69.6
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 8.9e-214 747.3 553 69.8
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 8.9e-214 747.3 526 71.9
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.5e-213 746.5 556 69.6
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.5e-213 746.5 525 72.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.4e-213 745.3 549 69.8
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 5.8e-213 744.6 549 69.8
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 7.6e-213 744.2 552 68.8
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.6e-213 744.2 557 68.9
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 9.9e-213 743.8 520 72.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.3e-212 743.4 555 69.2
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.3e-212 743.4 526 71.3
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.7e-212 743.0 526 71.7
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.9e-212 741.5 525 72.2
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 6.4e-212 741.1 545 69.7
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.1e-211 740.3 552 69.2
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.2e-211 738.8 519 71.9
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 9.2e-211 737.3 562 68.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 1.2e-210 736.9 526 70.9
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.0e-210 734.6 526 71.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.8e-210 734.2 534 71.2
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.0e-209 733.8 530 70.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-209 733.8 567 67.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-209 733.8 567 67.7
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.3e-209 732.6 526 71.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.9e-209 731.9 552 68.7
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.9e-209 731.9 551 69.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 3.9e-209 731.9 550 68.7
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 5.1e-209 731.5 519 71.3
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.1e-209 731.5 551 69.0
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.6e-209 731.1 532 70.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.6e-209 731.1 555 68.6
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-208 730.3 526 71.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.1e-208 730.3 552 69.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-208 729.9 535 69.9
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.9e-208 729.6 534 69.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.5e-208 729.2 526 70.5
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.5e-208 729.2 546 69.4
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.5e-208 729.2 534 71.2
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.3e-208 728.8 553 68.2
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.3e-208 728.4 525 71.2
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 5.6e-208 728.0 554 68.8
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 9.6e-208 727.2 550 68.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-207 726.5 555 68.1
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 2.1e-207 726.1 555 67.9
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.8e-207 725.7 550 67.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.6e-207 725.3 526 70.5
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 3.6e-207 725.3 530 69.4
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 8.1e-207 724.2 546 69.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.1e-207 724.2 558 65.2
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.1e-206 723.8 550 67.5
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.4e-206 723.4 560 68.2
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.8e-206 723.0 560 68.4
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 4.0e-206 721.8 525 70.3
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 9.0e-206 720.7 549 67.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.2e-205 720.3 525 70.3
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.5e-205 719.9 523 69.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.5e-205 719.9 527 70.4
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.4e-205 718.8 554 67.0
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.7e-204 716.5 557 67.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.2e-204 716.1 525 69.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 4.9e-204 714.9 522 67.4
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.4e-204 714.5 542 67.9
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 6.4e-204 714.5 525 69.7
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.1e-203 713.8 554 67.5
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.4e-203 713.4 549 67.2
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.9e-203 713.0 518 69.1
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.2e-203 711.8 555 65.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.2e-203 711.8 524 68.1
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.6e-202 709.9 519 69.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.6e-202 708.4 526 67.5
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 4.6e-202 708.4 526 69.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.7e-201 706.4 550 66.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.9e-201 705.3 526 67.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 5.1e-201 704.9 552 67.0
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-200 703.4 526 66.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.5e-200 703.4 522 67.6
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-200 703.0 527 66.6
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.9e-200 703.0 530 67.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 9.6e-200 700.7 522 67.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-199 699.9 522 67.8
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.1e-199 699.5 531 67.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 2.8e-199 699.1 524 66.8
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 2.8e-199 699.1 524 66.8
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.8e-199 699.1 528 67.4
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.6e-199 698.7 553 66.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.4e-198 696.8 518 67.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 5.3e-198 694.9 522 67.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 5.3e-198 694.9 546 65.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-197 693.7 517 67.7
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.2e-197 693.7 517 67.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-197 693.7 548 65.5
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.5e-197 693.3 553 64.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.5e-197 691.8 623 60.2
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.2e-196 689.5 523 66.7
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.2e-196 689.5 522 67.0
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.8e-196 688.7 548 64.8
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 9.3e-195 684.1 513 68.6
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 2.1e-194 682.9 563 62.3
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 3.5e-194 682.2 555 64.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 3.5e-194 682.2 555 64.3
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.5e-194 682.2 520 67.3
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.3e-193 679.5 542 66.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.1e-193 678.3 529 64.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-192 675.6 525 64.6
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.6e-192 674.9 550 63.6
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.4e-190 669.5 517 67.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.4e-189 665.6 523 64.6
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 6.4e-188 661.4 567 61.9
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-186 655.6 527 63.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.3e-183 647.1 526 65.8
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.2e-183 644.4 519 63.4
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.4e-182 643.7 526 64.3
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 9.0e-182 641.0 522 65.7
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.2e-179 632.1 542 63.1
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.3e-179 630.9 527 62.6
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.1e-178 629.8 531 63.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-177 627.5 527 62.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.5e-176 623.6 520 62.9
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 9.7e-176 620.9 482 67.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.3e-175 618.2 497 64.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.3e-175 618.2 560 58.9
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-174 617.1 421 73.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 6.9e-174 614.8 484 65.5
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.5e-173 612.1 512 63.3
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.5e-171 606.3 407 74.4
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.9e-169 599.0 527 60.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.7e-168 594.3 413 73.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 9.7e-168 594.3 407 73.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-166 590.9 528 58.5
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 1.3e-164 583.9 518 61.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.0e-152 543.5 558 52.3
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.7e-148 530.4 380 68.9
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-147 527.3 475 57.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 7.5e-136 488.4 379 66.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.8e-129 467.2 532 51.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.8e-121 438.7 461 52.9
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.3e-100 371.3 295 64.4
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.6e-98 364.4 263 70.3
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 7.1e-86 322.4 239 66.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.3e-60 237.7 155 75.5
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.9e-60 236.9 145 82.1
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.0e-48 198.0 164 58.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 7.2e-46 189.5 166 55.4
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.6e-45 187.2 163 56.4
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.3e-44 184.5 163 55.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 2.0e-35 154.8 123 65.0
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.0e-32 144.8 97 77.3
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.1e-21 106.7 315 28.3
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.3e-20 104.8 94 55.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.7e-18 98.6 94 51.1
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.5e-16 90.9 60 75.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-15 89.4 115 45.2
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.8e-15 87.4 188 30.9
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.5e-14 85.5 123 39.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-13 82.4 197 31.5
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.4e-12 79.0 70 70.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.0e-12 77.4 187 28.3
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-11 74.3 111 41.4
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 7.5e-11 73.2 101 45.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.7e-08 64.7 96 43.8


User provided reference genes

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