Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0245400 Oryza sativa ssp. japonica HOM05D000925 ORTHO05D001623 1.2e-160 570.1 349 100.0
Os11g0282300 Oryza sativa ssp. japonica HOM05D000925 ORTHO05D001623 1.2e-11 75.1 65 60.0
Os12g0230600 Oryza sativa ssp. japonica HOM05D000925 ORTHO05D001623 3.5e-11 73.6 54 64.8
Sp1g04700 Schrenkiella parvula HOM05D000925 ORTHO05D001623 1.7e-10 71.2 41 75.6
EL10Ac3g05577 Beta vulgaris HOM05D000925 ORTHO05D001623 2.9e-10 70.5 53 60.4
Aa31LG1G8470 Aethionema arabicum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
Aa31LG5G5370 Aethionema arabicum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
Ah.07g201770 Amaranthus hybridus HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
AL4G26820 Arabidopsis lyrata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
AT2G31560 Arabidopsis thaliana HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BcaB01g04033 Brassica carinata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BcaC01g05941 Brassica carinata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BcaC05g24326 Brassica carinata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BcaC05g24327 Brassica carinata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BcaC05g24328 Brassica carinata HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
A03p17730 Brassica napus HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
A10p04570 Brassica napus HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
C03p20810 Brassica napus HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
C04p60910 Brassica napus HOM05D001583 ORTHO05D001900 3.8e-10 70.1 41 73.2
C05p04230 Brassica napus HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BolC3t14442H Brassica oleracea HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BolC4t27582H Brassica oleracea HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BolC5t29197H Brassica oleracea HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BraA03t11037Z Brassica rapa HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
BraA10t42721Z Brassica rapa HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
Carub.0004s1286 Capsella rubella HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
CAN.G65.186 Capsicum annuum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
CARHR125210 Cardamine hirsuta HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
AUR62015421 Chenopodium quinoa HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
ECA248G0605 Erigeron canadensis HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
PGR083G0517 Punica granatum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 47 66.0
Sabra07G0102800 Salix brachista HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
Solyc06g073450.4 Solanum lycopersicum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
Sopen06g029810 Solanum pennellii HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
PGSC0003DMG400027006 Solanum tuberosum HOM05D000925 ORTHO05D001623 3.8e-10 70.1 41 73.2
THA.LOC104803633 Tarenaya hassleriana HOM05D000925 ORTHO05D001623 5.0e-10 69.7 41 73.2
HanXRQChr16g0502631 Helianthus annuus HOM05D000925 ORTHO05D001623 6.5e-10 69.3 66 53.0
Lj5g0008666 Lotus japonicus HOM05D000925 ORTHO05D001623 6.5e-10 69.3 56 62.5
Atru.chr3.1556 Acer truncatum HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Atru.chr3.1577 Acer truncatum HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
AL1G15810 Arabidopsis lyrata HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
BcaC07g42103 Brassica carinata HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
BcaC07g42105 Brassica carinata HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Carub.0001s0523 Capsella rubella HOM05D000925 ORTHO05D001623 8.6e-10 68.9 59 57.6
Cpa.g.sc71.14 Carica papaya HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
CiPaw.02G056000 Carya illinoinensis HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Thhalv10008864m.g Eutrema salsugineum HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Manes.04G041140 Manihot esculenta HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Manes.11G117600 Manihot esculenta HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Potri.007G126700 Populus trichocarpa HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
Sabra17G0020600 Salix brachista HOM05D000925 ORTHO05D001623 8.6e-10 68.9 41 70.7
VMungo0720G0648 Vigna mungo HOM05D000925 ORTHO05D001623 8.6e-10 68.9 61 54.1
Zm00001eb144580 Zea mays HOM05D000925 ORTHO05D001623 8.6e-10 68.9 61 57.4
Zm00001eb168830 Zea mays HOM05D000925 ORTHO05D001623 8.6e-10 68.9 65 58.5
Aa31LG1G25080 Aethionema arabicum HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
AL4G42020 Arabidopsis lyrata HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
AL762U10020 Arabidopsis lyrata HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
AT2G43340 Arabidopsis thaliana HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BcaB01g03392 Brassica carinata HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BcaB06g29307 Brassica carinata HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BcaC02g07187 Brassica carinata HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
A03p24190 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
A04p24180 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
A04p32680 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
C03p28830 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
C04p70370 Brassica napus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BolC4t28540H Brassica oleracea HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BraA03t11628Z Brassica rapa HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BraA04t17938Z Brassica rapa HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
BraA04t18731Z Brassica rapa HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Carub.0004s2580 Capsella rubella HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
CARHR138420 Cardamine hirsuta HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
ClCG07G015530 Citrullus lanatus HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
ECA238G2991 Erigeron canadensis HOM05D005615 ORTHO05D007558 1.1e-09 68.6 41 70.7
Thhalv10001651m.g Eutrema salsugineum HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Lsat_1_v5_gn_1_71681 Lactuca sativa HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Nitab4.5_0002368g0040 Nicotiana tabacum HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Nitab4.5_0004579g0030 Nicotiana tabacum HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Peaxi162Scf00375g00616 Petunia axillaris HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Sp4g25440 Schrenkiella parvula HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Sed0003267 Sechium edule HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Sed0024492 Sechium edule HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
HPP92_023708 Vanilla planifolia HOM05D000925 ORTHO05D001623 1.1e-09 68.6 41 70.7
Lj6A59T26 Lonicera japonica HOM05D000925 ORTHO05D001623 1.5e-09 68.2 41 70.7
PSO017G3190 Papaver somniferum HOM05D000925 ORTHO05D001623 1.5e-09 68.2 41 70.7
PSO675G5879 Papaver somniferum HOM05D000925 ORTHO05D001623 1.5e-09 68.2 41 70.7
AT1G05870 Arabidopsis thaliana HOM05D000925 ORTHO05D001623 1.9e-09 67.8 41 68.3
CSS0038754 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 1.9e-09 67.8 69 55.1
Os01g0898800 Oryza sativa ssp. japonica HOM05D000925 ORTHO05D001623 1.9e-09 67.8 60 56.7
Rhsim02G0076000 Rhododendron simsii HOM05D000925 ORTHO05D001623 1.9e-09 67.8 41 70.7
Sp4g14030 Schrenkiella parvula HOM05D000925 ORTHO05D001623 1.9e-09 67.8 41 70.7
vmacro15643 Vaccinium macrocarpon HOM05D000925 ORTHO05D001623 1.9e-09 67.8 41 70.7
arahy.Tifrunner.gnm1.ann1.AINH12 Arachis hypogaea HOM05D000925 ORTHO05D001623 2.5e-09 67.4 54 57.4
arahy.Tifrunner.gnm1.ann1.SD34JU Arachis hypogaea HOM05D000925 ORTHO05D001623 2.5e-09 67.4 54 57.4
CiPaw.01G102100 Carya illinoinensis HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
CDE09G0359 Ceratophyllum demersum HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
Ciclev10022453m.g Citrus clementina HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
HanXRQChr05g0160061 Helianthus annuus HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
HanXRQChr14g0437011 Helianthus annuus HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
Lsat_1_v5_gn_2_51320 Lactuca sativa HOM05D000925 ORTHO05D001623 2.5e-09 67.4 41 68.3
Actinidia35966 Actinidia chinensis HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
Aqoxy2G04107 Aquilegia oxysepala HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
BcaC01g05238 Brassica carinata HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
BcaC01g05239 Brassica carinata HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
BolC3t15242H Brassica oleracea HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
MELO3C011635.2 Cucumis melo HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 70.7
Thhalv10017248m.g Eutrema salsugineum HOM05D000925 ORTHO05D001623 3.3e-09 67.0 59 54.2
THA.LOC104802305 Tarenaya hassleriana HOM05D000925 ORTHO05D001623 3.3e-09 67.0 66 53.0
TAR362G1173 Trochodendron aralioides HOM05D000925 ORTHO05D001623 3.3e-09 67.0 41 68.3
HPP92_005395 Vanilla planifolia HOM05D000925 ORTHO05D001623 3.3e-09 67.0 68 51.5
Zm00001eb365650 Zea mays HOM05D000925 ORTHO05D001623 3.3e-09 67.0 62 56.5
Actinidia34616 Actinidia chinensis HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
BcaC02g12408 Brassica carinata HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
A05p03720 Brassica napus HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
C04p04410 Brassica napus HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
BolC4t22074H Brassica oleracea HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
BraA05t19359Z Brassica rapa HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
HanXRQChr02g0058001 Helianthus annuus HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
HanXRQChr07g0186101 Helianthus annuus HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
MBI08_g17987_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 4.2e-09 66.6 41 68.3
CSS0026799 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 5.5e-09 66.2 67 55.2
RcHm_v2.0_Chr0c40g0503391 Rosa chinensis HOM05D000925 ORTHO05D001623 5.5e-09 66.2 50 56.0
RcHm_v2.0_Chr4g0407341 Rosa chinensis HOM05D000925 ORTHO05D001623 5.5e-09 66.2 50 56.0
Hund03145 Selenicereus undatus HOM05D000925 ORTHO05D001623 5.5e-09 66.2 39 71.8
BcaC07g42104 Brassica carinata HOM05D000925 ORTHO05D001623 7.2e-09 65.9 65 52.3
A09p67260 Brassica napus HOM05D000925 ORTHO05D001623 7.2e-09 65.9 65 52.3
C08p51550 Brassica napus HOM05D000925 ORTHO05D001623 7.2e-09 65.9 65 52.3
BolC8t52683H Brassica oleracea HOM05D000925 ORTHO05D001623 7.2e-09 65.9 65 52.3
BraA09t42059Z Brassica rapa HOM05D000925 ORTHO05D001623 7.2e-09 65.9 65 52.3
Ca_11406_v3 Cicer arietinum L. HOM05D000925 ORTHO05D001623 7.2e-09 65.9 39 71.8
COL.COLO4_14423 Corchorus olitorius HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
DCAR_029918 Daucus carota HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
Duzib093G1454 Durio zibethinus HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
Hma1.2p1_0754F.1_g213120 Hydrangea macrophylla HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
Prupe.1G189800 Prunus persica HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
Sc25g0002930 Simmondsia chinensis HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
TAR633G0580 Trochodendron aralioides HOM05D000925 ORTHO05D001623 7.2e-09 65.9 41 65.9
CARHR005410 Cardamine hirsuta HOM05D000925 ORTHO05D001623 9.5e-09 65.5 63 54.0
CsaV3_6G003800 Cucumis sativus L. HOM05D000925 ORTHO05D001623 9.5e-09 65.5 41 68.3
Lsat_1_v5_gn_6_55301 Lactuca sativa HOM05D000925 ORTHO05D001623 9.5e-09 65.5 67 50.7
Lalb_Chr02g0144341 Lupinus albus HOM05D000925 ORTHO05D001623 9.5e-09 65.5 41 65.9
Phvul.007G003800 Phaseolus vulgaris HOM05D000925 ORTHO05D001623 9.5e-09 65.5 61 50.8
Potri.017G032800 Populus trichocarpa HOM05D000925 ORTHO05D001623 9.5e-09 65.5 67 50.7
MELO3C017731.2 Cucumis melo HOM05D000925 ORTHO05D001623 1.2e-08 65.1 59 52.5
CsaV3_4G003160 Cucumis sativus L. HOM05D000925 ORTHO05D001623 1.2e-08 65.1 59 52.5
ClCG08G004360 Citrullus lanatus HOM05D000925 ORTHO05D001623 1.6e-08 64.7 41 68.3
FAN22G0631 Fragaria x ananassa HOM05D000925 ORTHO05D001623 1.6e-08 64.7 41 65.9
MBI11_g35024_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 1.6e-08 64.7 41 65.9
MBI16_g29132_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 1.6e-08 64.7 41 65.9
Medtr1g116590 Medicago truncatula HOM05D000925 ORTHO05D001623 1.6e-08 64.7 39 69.2
Psat6g062200 Pisum sativum HOM05D000925 ORTHO05D001623 1.6e-08 64.7 39 69.2
Sed0023768 Sechium edule HOM05D000925 ORTHO05D001623 2.1e-08 64.3 55 54.5
Thecc.05G003600 Theobroma cacao HOM05D000925 ORTHO05D001623 2.1e-08 64.3 54 53.7
Cfa015766 Carpinus fangiana HOM05D008684 ORTHO05D010796 2.8e-08 63.9 40 65.0
MBI08_g30816_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 2.8e-08 63.9 41 65.9
HPP92_008991 Vanilla planifolia HOM05D000925 ORTHO05D001623 2.8e-08 63.9 69 47.8
ECA233G2175 Erigeron canadensis HOM05D000925 ORTHO05D001623 3.6e-08 63.5 71 47.9
Gohir.A01G230900 Gossypium hirsutum HOM05D000925 ORTHO05D001623 3.6e-08 63.5 57 54.4
Gohir.D01G221000 Gossypium hirsutum HOM05D000925 ORTHO05D001623 3.6e-08 63.5 57 54.4
Gorai.002G267600 Gossypium raimondii HOM05D000925 ORTHO05D001623 3.6e-08 63.5 57 54.4
CDE08G0581 Ceratophyllum demersum HOM05D000925 ORTHO05D001623 4.7e-08 63.2 41 63.4
Dinv22715 Davidia involucrata HOM05D000925 ORTHO05D001623 4.7e-08 63.2 39 66.7
FvH4_4g11250 Fragaria vesca HOM05D000925 ORTHO05D001623 4.7e-08 63.2 41 63.4
FAN07G0453 Fragaria x ananassa HOM05D000925 ORTHO05D001623 4.7e-08 63.2 41 63.4
HPP92_008997 Vanilla planifolia HOM05D000925 ORTHO05D001623 8.0e-08 62.4 69 46.4
QL10p048174 Quercus lobata HOM05D000925 ORTHO05D001623 1.8e-07 61.2 41 63.4
Rhsim09G0029700 Rhododendron simsii HOM05D000925 ORTHO05D001623 2.3e-07 60.8 39 69.2
vmacro00607 Vaccinium macrocarpon HOM05D000925 ORTHO05D001623 2.3e-07 60.8 56 51.8
MBI13_g26682_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 4.0e-07 60.1 41 63.4
MBI17_g34583_MAGBIO Magnolia biondii HOM05D000925 ORTHO05D001623 4.0e-07 60.1 42 61.9
ATR0743G147 Amborella trichopoda HOM05D000925 ORTHO05D001623 5.2e-07 59.7 42 64.3
SEGI_27890 Sequoiadendron giganteum HOM05D000925 ORTHO05D001623 5.2e-07 59.7 41 58.5


User provided reference genes

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