Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0244600 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D010447 3.9e-192 674.9 396 100.0
Zm00001eb112340 Zea mays HOM05D000291 ORTHO05D010447 6.1e-105 385.2 384 62.5
Zm00001eb168140 Zea mays HOM05D000291 ORTHO05D010447 6.8e-104 381.7 409 58.4
HPP92_016124 Vanilla planifolia HOM05D000291 ORTHO05D010447 5.4e-53 212.6 355 40.3
MBI06_g17065_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D010447 8.4e-46 188.7 396 35.9
COL.COLO4_25113 Corchorus olitorius HOM05D000291 ORTHO05D010447 2.7e-36 157.1 349 35.2
TAR381G1183 Trochodendron aralioides HOM05D000291 ORTHO05D010447 7.9e-36 155.6 392 33.2
Glyma.09G156200 Glycine max HOM05D000291 ORTHO05D010447 1.8e-35 154.5 285 36.5
Haze_14022 Corylus avellana HOM05D000291 ORTHO05D010447 3.0e-35 153.7 349 34.7
CiPaw.03G011500 Carya illinoinensis HOM05D000291 ORTHO05D010447 8.7e-35 152.1 370 32.7
Glyma.16G206900 Glycine max HOM05D000291 ORTHO05D010447 1.1e-34 151.8 374 33.4
Potri.019G063700 Populus trichocarpa HOM05D000291 ORTHO05D010447 3.3e-34 150.2 361 33.8
GSVIVG01037092001 Vitis vinifera HOM05D000291 ORTHO05D010447 4.3e-34 149.8 385 32.7
Nn5g27129 Nelumbo nucifera HOM05D000291 ORTHO05D010447 9.6e-34 148.7 324 34.6
Ciclev10020278m.g Citrus clementina HOM05D000291 ORTHO05D010447 2.8e-33 147.1 317 36.3
Duzib053G0006 Durio zibethinus HOM05D000291 ORTHO05D010447 3.7e-33 146.7 395 32.4
Thecc.08G167100 Theobroma cacao HOM05D000291 ORTHO05D010447 4.8e-33 146.4 386 32.6
Manes.06G017300 Manihot esculenta HOM05D000291 ORTHO05D010447 6.2e-33 146.0 387 32.0
THA.LOC104806484 Tarenaya hassleriana HOM05D000291 ORTHO05D010447 1.4e-32 144.8 343 32.9
Sabra19G0076900 Salix brachista HOM05D000291 ORTHO05D010447 3.1e-32 143.7 360 31.7
Sabra19G0079900 Salix brachista HOM05D000291 ORTHO05D010447 3.1e-32 143.7 360 31.7
Gohir.D05G250400 Gossypium hirsutum HOM05D000291 ORTHO05D010447 5.3e-32 142.9 389 31.6
VMungo0464G0109 Vigna mungo HOM05D000291 ORTHO05D010447 5.3e-32 142.9 379 32.7
Cfa008034 Carpinus fangiana HOM05D000291 ORTHO05D010447 6.9e-32 142.5 290 37.6
Gorai.009G261800 Gossypium raimondii HOM05D000291 ORTHO05D010447 6.9e-32 142.5 389 31.4
TWI18G0939 Tripterygium wilfordii HOM05D000291 ORTHO05D010447 6.9e-32 142.5 389 32.6
Phvul.004G131400 Phaseolus vulgaris HOM05D000291 ORTHO05D010447 1.2e-31 141.7 374 32.4
Gohir.A05G248801 Gossypium hirsutum HOM05D000291 ORTHO05D010447 1.5e-31 141.4 389 31.4
Lalb_Chr03g0033271 Lupinus albus HOM05D000291 ORTHO05D010447 4.5e-31 139.8 288 36.8
CiPaw.04G007800 Carya illinoinensis HOM05D000291 ORTHO05D010447 1.3e-30 138.3 292 35.6
Lalb_Chr01g0008681 Lupinus albus HOM05D000291 ORTHO05D010447 5.0e-30 136.3 372 32.3
QL09p001081 Quercus lobata HOM05D000291 ORTHO05D010447 1.4e-29 134.8 291 36.1
Lj2g0002305 Lotus japonicus HOM05D000291 ORTHO05D010447 1.9e-29 134.4 284 36.6
TPR.G38715 Trifolium pratense HOM05D000291 ORTHO05D010447 1.9e-29 134.4 368 31.8
Psat1g112720 Pisum sativum HOM05D000291 ORTHO05D010447 1.2e-28 131.7 292 34.9
Dinv37394 Davidia involucrata HOM05D000291 ORTHO05D010447 2.7e-28 130.6 304 34.9
Sp1g28810 Schrenkiella parvula HOM05D000291 ORTHO05D010447 3.0e-27 127.1 284 34.9
AT1G33340 Arabidopsis thaliana HOM05D000291 ORTHO05D010447 3.9e-27 126.7 373 30.8
Eucgr.F02929 Eucalyptus grandis HOM05D000291 ORTHO05D010447 3.9e-27 126.7 290 35.2
Carub.0001s3152 Capsella rubella HOM05D000291 ORTHO05D010447 6.7e-27 125.9 354 31.1
Aa31LG6G7890 Aethionema arabicum HOM05D000291 ORTHO05D010447 8.7e-27 125.6 286 35.0
Cpa.g.sc21.225 Carica papaya HOM05D000291 ORTHO05D010447 8.7e-27 125.6 335 34.6
CARHR032770 Cardamine hirsuta HOM05D000291 ORTHO05D010447 3.3e-26 123.6 354 30.5
AL1G47740 Arabidopsis lyrata HOM05D000291 ORTHO05D010447 1.3e-25 121.7 354 31.6
BcaB07g32985 Brassica carinata HOM05D000291 ORTHO05D010447 4.8e-25 119.8 285 34.7
Thhalv10007834m.g Eutrema salsugineum HOM05D000291 ORTHO05D010447 6.3e-25 119.4 367 30.5
PSO017G1124 Papaver somniferum HOM05D000291 ORTHO05D010447 4.1e-24 116.7 367 31.3
A09p32840 Brassica napus HOM05D000291 ORTHO05D010447 1.5e-23 114.8 285 33.7
BraA09t38819Z Brassica rapa HOM05D000291 ORTHO05D010447 2.0e-23 114.4 285 33.7
Medtr6g059380 Medicago truncatula HOM05D000291 ORTHO05D010447 3.4e-23 113.6 286 33.2
BcaC08g43857 Brassica carinata HOM05D000291 ORTHO05D010447 4.5e-23 113.2 285 33.3
BolC6t36395H Brassica oleracea HOM05D000291 ORTHO05D010447 4.5e-23 113.2 285 33.3
PSO170G2324 Papaver somniferum HOM05D000291 ORTHO05D010447 1.7e-22 111.3 363 32.8
C06p12410 Brassica napus HOM05D000291 ORTHO05D010447 2.2e-22 110.9 285 33.0
Nn5g29266 Nelumbo nucifera HOM05D000291 ORTHO05D010447 1.4e-21 108.2 142 43.0
Nn2g14905 Nelumbo nucifera HOM05D000291 ORTHO05D010447 5.7e-18 96.3 137 40.1
Nn1g09708 Nelumbo nucifera HOM05D000291 ORTHO05D010447 7.9e-12 75.9 81 48.1
Zm00001eb274640 Zea mays HOM05D000291 ORTHO05D000879 3.9e-11 73.6 283 27.2
A09p23540 Brassica napus HOM05D000291 ORTHO05D000879 4.8e-09 66.6 308 25.6
C09p30380 Brassica napus HOM05D000291 ORTHO05D000879 4.8e-09 66.6 308 26.0
Lj4g0024151 Lotus japonicus HOM05D000291 ORTHO05D000879 4.8e-09 66.6 287 26.1
A02p32190 Brassica napus HOM05D000291 ORTHO05D000879 8.2e-09 65.9 308 26.0
BraA02t08233Z Brassica rapa HOM05D000291 ORTHO05D000879 8.2e-09 65.9 308 26.0
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 8.2e-09 65.9 284 25.7
arahy.Tifrunner.gnm1.ann1.VH582U Arachis hypogaea HOM05D000291 ORTHO05D000879 1.1e-08 65.5 287 26.1
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 1.1e-08 65.5 284 25.7
Actinidia03593 Actinidia chinensis HOM05D000291 ORTHO05D008053 1.4e-08 65.1 297 25.9
BcaC04g21560 Brassica carinata HOM05D000291 ORTHO05D000879 1.4e-08 65.1 308 25.6
Glyma.08G095000 Glycine max HOM05D000291 ORTHO05D000879 1.4e-08 65.1 289 25.3
Ah.02g127840 Amaranthus hybridus HOM05D000291 ORTHO05D000879 1.8e-08 64.7 283 26.1
Glyma.05G139700 Glycine max HOM05D000291 ORTHO05D000879 1.8e-08 64.7 286 25.5
SMO367G0776 Selaginella moellendorffii HOM05D000291 ORTHO05D001358 1.8e-08 64.7 307 23.5
CiPaw.05G193700 Carya illinoinensis HOM05D000291 ORTHO05D000879 2.4e-08 64.3 287 25.8
Lalb_Chr10g0095981 Lupinus albus HOM05D000291 ORTHO05D000879 3.1e-08 63.9 285 25.6
EL10Ac6g14172 Beta vulgaris HOM05D000291 ORTHO05D000879 4.1e-08 63.5 284 25.7
C07p32210 Brassica napus HOM05D000291 ORTHO05D000879 4.1e-08 63.5 308 25.6
Rhsim04G0050400 Rhododendron simsii HOM05D000291 ORTHO05D008053 4.1e-08 63.5 294 26.9
Sc04g0005290 Simmondsia chinensis HOM05D000291 ORTHO05D000879 4.1e-08 63.5 284 25.7
THA.LOC104805074 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 4.1e-08 63.5 308 26.9
TWI77G0055 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 4.1e-08 63.5 285 26.0
BcaC03g17057 Brassica carinata HOM05D000291 ORTHO05D000879 5.3e-08 63.2 308 25.6
C02p49770 Brassica napus HOM05D000291 ORTHO05D000879 5.3e-08 63.2 308 25.6
BraA09t37956Z Brassica rapa HOM05D000291 ORTHO05D000879 5.3e-08 63.2 315 25.1
CANSAT01G2022 Cannabis sativa HOM05D000291 ORTHO05D000879 5.3e-08 63.2 290 25.5
Lalb_Chr07g0187741 Lupinus albus HOM05D000291 ORTHO05D000879 5.3e-08 63.2 290 24.1
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 5.3e-08 63.2 311 24.8
Phvul.003G022000 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 5.3e-08 63.2 284 26.4
THA.LOC104823768 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 5.3e-08 63.2 308 26.6
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 5.3e-08 63.2 286 25.9
VMungo0251G2294 Vigna mungo HOM05D000291 ORTHO05D000879 5.3e-08 63.2 285 24.9
BcaC06g34145 Brassica carinata HOM05D000291 ORTHO05D000879 7.0e-08 62.8 308 25.3
BolC2t11056H Brassica oleracea HOM05D000291 ORTHO05D000879 7.0e-08 62.8 308 25.6
BolC7t43760H Brassica oleracea HOM05D000291 ORTHO05D000879 7.0e-08 62.8 308 25.3
AUR62014172 Chenopodium quinoa HOM05D000291 ORTHO05D000879 7.0e-08 62.8 285 27.0
Dinv28047 Davidia involucrata HOM05D000291 ORTHO05D000879 7.0e-08 62.8 293 24.6
Os06g0661400 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D000879 7.0e-08 62.8 223 28.3
AagrBONN_evm.TU.Sc2ySwM_340.407 Anthoceros agrestis HOM05D000291 ORTHO05D000879 9.1e-08 62.4 268 26.1
A06p44260 Brassica napus HOM05D000291 ORTHO05D000879 9.1e-08 62.4 308 25.3
BraA06t27301Z Brassica rapa HOM05D000291 ORTHO05D000879 9.1e-08 62.4 308 25.3
CSS0011787 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D008053 9.1e-08 62.4 297 25.9
Lalb_Chr17g0338561 Lupinus albus HOM05D000291 ORTHO05D000879 9.1e-08 62.4 286 25.2
Phvul.002G183100 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 9.1e-08 62.4 285 24.6
TAR626G1092 Trochodendron aralioides HOM05D000291 ORTHO05D001358 9.1e-08 62.4 314 26.4
Manes.17G080600 Manihot esculenta HOM05D000291 ORTHO05D000879 1.2e-07 62.0 290 25.2
SGA_v2.0_scaffold70G23383 Striga asiatica HOM05D000291 ORTHO05D008053 1.2e-07 62.0 274 27.4
unitig_22.g5597 Utricularia gibba HOM05D000291 ORTHO05D000879 1.2e-07 62.0 273 27.1
Pp3c18_3170 Physcomitrium patens HOM05D000291 ORTHO05D000879 1.5e-07 61.6 274 26.3
MSTRG.2150 Avicennia marina HOM05D000291 ORTHO05D000879 2.0e-07 61.2 285 26.0
BcaB07g30387 Brassica carinata HOM05D000291 ORTHO05D000879 2.0e-07 61.2 308 25.3
PGR102G1782 Punica granatum HOM05D000291 ORTHO05D000879 2.6e-07 60.8 290 24.8
AL5G10690 Arabidopsis lyrata HOM05D000291 ORTHO05D000879 3.5e-07 60.5 308 25.0
Sp2g13040 Schrenkiella parvula HOM05D000291 ORTHO05D000879 3.5e-07 60.5 308 25.0
Aa31LG2G8300 Aethionema arabicum HOM05D000291 ORTHO05D000879 4.5e-07 60.1 319 24.5
AT2G01600 Arabidopsis thaliana HOM05D000291 ORTHO05D000879 4.5e-07 60.1 308 25.0
Carub.0005s0054 Capsella rubella HOM05D000291 ORTHO05D000879 4.5e-07 60.1 287 24.7
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 4.5e-07 60.1 306 24.5
Cfa014983 Carpinus fangiana HOM05D000291 ORTHO05D000879 4.5e-07 60.1 289 24.9
Thhalv10003910m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 4.5e-07 60.1 308 25.0
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 4.5e-07 60.1 284 23.9
SalBow5G2750 Salvia bowleyana HOM05D000291 ORTHO05D000879 4.5e-07 60.1 302 25.2
TWI74G1380 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 4.5e-07 60.1 286 25.9
CARHR144150 Cardamine hirsuta HOM05D000291 ORTHO05D000879 5.9e-07 59.7 308 25.0
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 5.9e-07 59.7 285 24.2
Manes.15G131300 Manihot esculenta HOM05D000291 ORTHO05D000879 5.9e-07 59.7 289 24.2
Mapoly0072s0094 Marchantia polymorpha HOM05D000291 ORTHO05D000879 5.9e-07 59.7 283 25.4
Potri.010G110000 Populus trichocarpa HOM05D000291 ORTHO05D000879 5.9e-07 59.7 285 25.6
Aa31LG1G150 Aethionema arabicum HOM05D000291 ORTHO05D000879 7.7e-07 59.3 309 25.6
MSTRG.16560 Avicennia marina HOM05D000291 ORTHO05D001358 7.7e-07 59.3 282 26.2
Lj6C742T5 Lonicera japonica HOM05D000291 ORTHO05D000879 7.7e-07 59.3 283 25.1
QL03p033925 Quercus lobata HOM05D000291 ORTHO05D000879 7.7e-07 59.3 285 24.9
Solyc07g049380.1 Solanum lycopersicum HOM05D000291 ORTHO05D008053 7.7e-07 59.3 299 24.4
SGA_v2.0_scaffold50G18473 Striga asiatica HOM05D000291 ORTHO05D000879 7.7e-07 59.3 285 25.6
vmacro10665 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 7.7e-07 59.3 284 25.7
Ah.03g137360 Amaranthus hybridus HOM05D000291 ORTHO05D000879 1.0e-06 58.9 283 25.1
Oeu059517.1 Olea europaea HOM05D000291 ORTHO05D000879 1.0e-06 58.9 283 24.4
Phvul.009G236300 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 1.0e-06 58.9 286 24.5
SalBow5G5558 Salvia bowleyana HOM05D000291 ORTHO05D000879 1.0e-06 58.9 294 25.2
Sed0009040 Sechium edule HOM05D000291 ORTHO05D000879 1.0e-06 58.9 285 24.2
vmacro09361 Vaccinium macrocarpon HOM05D000291 ORTHO05D008053 1.0e-06 58.9 298 25.5
Manes.13G066100 Manihot esculenta HOM05D000291 ORTHO05D008053 1.3e-06 58.5 294 24.8
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 1.3e-06 58.5 286 25.2
SMO347G0271 Selaginella moellendorffii HOM05D000291 ORTHO05D000879 1.3e-06 58.5 268 25.4
A02p08660 Brassica napus HOM05D000291 ORTHO05D000879 1.7e-06 58.2 285 25.6
BraA10t43546Z Brassica rapa HOM05D000291 ORTHO05D000879 1.7e-06 58.2 284 24.6
Nn3g18294 Nelumbo nucifera HOM05D000291 ORTHO05D000879 1.7e-06 58.2 286 26.2
SEGI_36242 Sequoiadendron giganteum HOM05D000291 ORTHO05D001358 1.7e-06 58.2 294 24.8
Sc21g0001140 Simmondsia chinensis HOM05D000291 ORTHO05D008053 1.7e-06 58.2 301 27.2
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 2.2e-06 57.8 284 23.2
TWI75G0674 Tripterygium wilfordii HOM05D000291 ORTHO05D008053 2.2e-06 57.8 295 25.8
Eucgr.B02940 Eucalyptus grandis HOM05D000291 ORTHO05D000879 2.9e-06 57.4 289 23.9
Potri.008G132100 Populus trichocarpa HOM05D000291 ORTHO05D000879 2.9e-06 57.4 290 25.5
Sabra08G0100700 Salix brachista HOM05D000291 ORTHO05D000879 2.9e-06 57.4 289 24.6
TAR629G0406 Trochodendron aralioides HOM05D000291 ORTHO05D000879 2.9e-06 57.4 305 24.9
Zm00001eb366190 Zea mays HOM05D000291 ORTHO05D000879 2.9e-06 57.4 307 26.4
Cc10_g12650 Coffea canephora HOM05D000291 ORTHO05D008053 3.8e-06 57.0 294 24.8
Nn4g24257 Nelumbo nucifera HOM05D000291 ORTHO05D000879 3.8e-06 57.0 284 23.6
Os05g0549000 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D000879 3.8e-06 57.0 284 23.9
A01p06100 Brassica napus HOM05D000291 ORTHO05D001358 5.0e-06 56.6 333 24.0
BraA01t00574Z Brassica rapa HOM05D000291 ORTHO05D001358 5.0e-06 56.6 333 24.0
Cpa.g.sc2.235 Carica papaya HOM05D000291 ORTHO05D000879 5.0e-06 56.6 290 25.2
CARHR015450 Cardamine hirsuta HOM05D000291 ORTHO05D000879 6.5e-06 56.2 307 26.1
Os02g0175700 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D000879 6.5e-06 56.2 298 24.8
Sopen07g024720 Solanum pennellii HOM05D000291 ORTHO05D008053 6.5e-06 56.2 301 23.9
SGA_v2.0_scaffold234G43660 Striga asiatica HOM05D000291 ORTHO05D000879 6.5e-06 56.2 284 24.6
Thecc.01G182000 Theobroma cacao HOM05D000291 ORTHO05D008053 6.5e-06 56.2 303 25.4
GSVIVG01029746001 Vitis vinifera HOM05D000291 ORTHO05D001358 6.5e-06 56.2 296 22.3
Zm00001eb233500 Zea mays HOM05D000291 ORTHO05D000879 6.5e-06 56.2 223 24.7
BcaC09g52010 Brassica carinata HOM05D000291 ORTHO05D001358 8.5e-06 55.8 334 23.7
C01p06710 Brassica napus HOM05D000291 ORTHO05D001358 8.5e-06 55.8 334 23.7
BolC1t00664H Brassica oleracea HOM05D000291 ORTHO05D001358 8.5e-06 55.8 334 23.7
DCAR_001503 Daucus carota HOM05D000291 ORTHO05D001358 8.5e-06 55.8 335 23.6
ECA234G2454 Erigeron canadensis HOM05D000291 ORTHO05D000879 8.5e-06 55.8 285 24.2
Thhalv10007171m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 8.5e-06 55.8 309 25.2
PSO017G0232 Papaver somniferum HOM05D000291 ORTHO05D000879 8.5e-06 55.8 274 26.3
PSO478G1335 Papaver somniferum HOM05D000291 ORTHO05D000879 8.5e-06 55.8 274 26.3


User provided reference genes

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