Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 3.4e-42 175.3 141 100.0
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 1.6e-28 129.8 138 84.1
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 1.5e-21 106.7 129 76.0
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.2e-18 97.1 131 64.9
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 7.7e-18 94.4 133 63.2
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 7.7e-18 94.4 130 68.5
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.3e-17 93.6 131 57.3
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 1.3e-17 93.6 130 66.9
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 1.3e-17 93.6 130 66.9
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 1.7e-17 93.2 133 69.2
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 1.7e-17 93.2 130 59.2
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 1.7e-17 93.2 131 55.0
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 2.2e-17 92.8 128 65.6
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 2.2e-17 92.8 129 61.2
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 2.9e-17 92.4 131 56.5
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 5.0e-17 91.7 137 51.8
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 5.0e-17 91.7 128 64.1
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 5.0e-17 91.7 129 66.7
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 8.5e-17 90.9 137 53.3
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 8.5e-17 90.9 130 56.2
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 1.1e-16 90.5 130 67.7
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 1.4e-16 90.1 129 71.3
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 3.2e-16 89.0 131 68.7
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 3.2e-16 89.0 130 57.7
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 3.2e-16 89.0 127 62.2
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 4.2e-16 88.6 139 66.2
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 7.2e-16 87.8 130 58.5
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 9.4e-16 87.4 133 51.1
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 1.2e-15 87.0 131 60.3
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 1.6e-15 86.7 130 54.6
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 2.1e-15 86.3 131 57.3
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 2.7e-15 85.9 139 57.6
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 2.7e-15 85.9 136 61.0
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 3.6e-15 85.5 129 69.0
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 3.6e-15 85.5 124 69.4
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 4.7e-15 85.1 130 61.5
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 4.7e-15 85.1 128 58.6
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 6.1e-15 84.7 150 54.7
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.0e-14 84.0 136 66.2
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.0e-14 84.0 136 66.2
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 1.4e-14 83.6 129 69.0
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 1.4e-14 83.6 129 69.0
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 1.4e-14 83.6 131 60.3
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 1.4e-14 83.6 127 66.9
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 1.8e-14 83.2 129 63.6
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 1.8e-14 83.2 135 63.7
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 1.8e-14 83.2 139 61.9
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 2.3e-14 82.8 133 52.6
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 2.3e-14 82.8 134 63.4
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 3.0e-14 82.4 142 57.0
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 3.9e-14 82.0 131 59.5
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 3.9e-14 82.0 149 53.0
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 3.9e-14 82.0 136 59.6
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 5.2e-14 81.6 136 58.1
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 6.7e-14 81.3 129 62.0
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 6.7e-14 81.3 129 62.0
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 6.7e-14 81.3 129 62.0
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 2.0e-13 79.7 131 54.2
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 2.6e-13 79.3 123 62.6
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 3.3e-13 79.0 130 55.4
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 4.4e-13 78.6 135 52.6
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 5.7e-13 78.2 123 60.2
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 5.7e-13 78.2 128 50.0
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 5.7e-13 78.2 128 57.8
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 7.4e-13 77.8 133 68.4
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 7.4e-13 77.8 128 66.4
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 7.4e-13 77.8 140 55.0
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 7.4e-13 77.8 133 66.9
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 9.7e-13 77.4 128 54.7
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 9.7e-13 77.4 128 60.9
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 3.7e-12 75.5 130 64.6
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 4.8e-12 75.1 135 51.1
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 4.8e-12 75.1 134 62.7
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 6.3e-12 74.7 122 52.5
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 8.2e-12 74.3 133 54.1
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 8.2e-12 74.3 133 54.1
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 1.4e-11 73.6 147 43.5
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 2.4e-11 72.8 128 60.2
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 3.1e-11 72.4 136 52.2
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 4.5e-10 68.6 141 60.3
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 7.7e-10 67.8 160 56.9
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 1.7e-09 66.6 56 57.1
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 2.2e-09 66.2 63 49.2
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 6.5e-09 64.7 156 38.5
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 7.2e-08 61.2 129 58.9
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 1.8e-06 56.6 98 62.2


User provided reference genes

Program Settings