Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0242400 Oryza sativa ssp. japonica HOM05D006690 ORTHO05D008541 5.8e-126 454.5 278 100.0
MBI06_g35694_MAGBIO Magnolia biondii HOM05D006690 ORTHO05D008541 4.0e-95 352.1 238 72.3
Nn5g27416 Nelumbo nucifera HOM05D006690 ORTHO05D008541 2.9e-93 345.9 253 69.2
Gohir.A05G252900 Gossypium hirsutum HOM05D006690 ORTHO05D008541 1.4e-92 343.6 233 74.2
Gohir.D05G254800 Gossypium hirsutum HOM05D006690 ORTHO05D008541 1.4e-92 343.6 233 74.2
GSVIVG01036428001 Vitis vinifera HOM05D006690 ORTHO05D008541 1.9e-92 343.2 243 69.1
Zm00001eb142810 Zea mays HOM05D006690 ORTHO05D008541 2.4e-92 342.8 252 72.6
Gorai.009G266300 Gossypium raimondii HOM05D006690 ORTHO05D008541 3.2e-92 342.4 232 72.4
Haze_13934 Corylus avellana HOM05D006690 ORTHO05D008541 4.2e-92 342.0 236 73.3
Cfa008102 Carpinus fangiana HOM05D006690 ORTHO05D008541 9.3e-92 340.9 236 72.9
TAR628G1481 Trochodendron aralioides HOM05D006690 ORTHO05D008541 1.2e-91 340.5 235 72.8
CiPaw.03G016600 Carya illinoinensis HOM05D006690 ORTHO05D008541 1.6e-91 340.1 250 68.0
Glyma.01G231900 Glycine max HOM05D006690 ORTHO05D008541 2.7e-91 339.3 230 70.4
Duzib177G0086 Durio zibethinus HOM05D006690 ORTHO05D008541 6.0e-91 338.2 232 72.8
Eucgr.F02968 Eucalyptus grandis HOM05D006690 ORTHO05D008541 6.0e-91 338.2 234 71.4
MSTRG.1587 Avicennia marina HOM05D006690 ORTHO05D008541 7.9e-91 337.8 233 70.8
Atru.chr13.2467 Acer truncatum HOM05D006690 ORTHO05D008541 1.0e-90 337.4 246 68.3
Potri.019G073900 Populus trichocarpa HOM05D006690 ORTHO05D008541 1.3e-90 337.0 245 71.0
VMungo1215G2418 Vigna mungo HOM05D006690 ORTHO05D008541 3.0e-90 335.9 230 71.7
EL10Ac1g01712 Beta vulgaris HOM05D006690 ORTHO05D008541 3.9e-90 335.5 243 68.7
MELO3C022193.2 Cucumis melo HOM05D006690 ORTHO05D008541 8.7e-90 334.3 233 69.1
Manes.18G119400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.1e-89 334.0 231 70.6
COL.COLO4_14973 Corchorus olitorius HOM05D006690 ORTHO05D008541 1.5e-89 333.6 230 71.7
TWI75G0001 Tripterygium wilfordii HOM05D006690 ORTHO05D008541 1.9e-89 333.2 245 68.2
AUR62022402 Chenopodium quinoa HOM05D006690 ORTHO05D008541 2.5e-89 332.8 239 69.5
Cpa.g.sc21.64 Carica papaya HOM05D006690 ORTHO05D008541 3.3e-89 332.4 235 68.9
Ah.05g168760 Amaranthus hybridus HOM05D006690 ORTHO05D008541 4.3e-89 332.0 234 69.2
AUR62043541 Chenopodium quinoa HOM05D006690 ORTHO05D008541 5.6e-89 331.6 239 69.0
CsaV3_5G040160 Cucumis sativus L. HOM05D006690 ORTHO05D008541 7.4e-89 331.3 233 69.1
HPP92_019451 Vanilla planifolia HOM05D006690 ORTHO05D008541 7.4e-89 331.3 237 69.6
Actinidia23025 Actinidia chinensis HOM05D006690 ORTHO05D008541 9.6e-89 330.9 234 71.8
LjContig00222g0026492 Lotus japonicus HOM05D006690 ORTHO05D008541 9.6e-89 330.9 234 69.7
CSS0006473 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 1.6e-88 330.1 236 69.5
Manes.02G208400 Manihot esculenta HOM05D006690 ORTHO05D008541 1.6e-88 330.1 231 69.3
Dinv09402 Davidia involucrata HOM05D006690 ORTHO05D008541 2.8e-88 329.3 235 68.9
CSS0045264 Camellia sinensis var. sinensis HOM05D006690 ORTHO05D008541 4.8e-88 328.6 236 69.1
Lj9A700T90 Lonicera japonica HOM05D006690 ORTHO05D008541 4.8e-88 328.6 234 68.4
ClCG08G000730 Citrullus lanatus HOM05D006690 ORTHO05D008541 6.2e-88 328.2 233 68.2
Lalb_Chr16g0376791 Lupinus albus HOM05D006690 ORTHO05D008541 1.1e-87 327.4 229 70.7
Cc10_g09110 Coffea canephora HOM05D006690 ORTHO05D008541 1.8e-87 326.6 208 76.0
Hma1.2p1_0442F.1_g153970 Hydrangea macrophylla HOM05D006690 ORTHO05D008541 3.1e-87 325.9 230 70.4
CANSAT21G2558 Cannabis sativa HOM05D006690 ORTHO05D008541 1.2e-86 323.9 235 68.9
QL09p003717 Quercus lobata HOM05D006690 ORTHO05D008541 1.5e-86 323.6 234 67.1
ATR1089G004 Amborella trichopoda HOM05D006690 ORTHO05D008541 2.0e-86 323.2 229 70.7
arahy.Tifrunner.gnm1.ann1.PSIH1X Arachis hypogaea HOM05D006690 ORTHO05D008541 2.0e-86 323.2 272 62.1
Sc02g0003840 Simmondsia chinensis HOM05D006690 ORTHO05D008541 3.4e-86 322.4 230 70.0
THA.LOC104800085 Tarenaya hassleriana HOM05D006690 ORTHO05D008541 3.4e-86 322.4 232 69.0
Nitab4.5_0004761g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.5e-86 322.0 230 70.4
Nitab4.5_0010632g0010 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.5e-86 322.0 230 70.4
SalBow7G1428 Salvia bowleyana HOM05D006690 ORTHO05D008541 4.5e-86 322.0 232 69.0
PGR042G1281 Punica granatum HOM05D006690 ORTHO05D008541 5.8e-86 321.6 255 63.5
CAN.G83.1 Capsicum annuum HOM05D006690 ORTHO05D008541 7.6e-86 321.2 231 69.3
Ca_24481_v3 Cicer arietinum L. HOM05D006690 ORTHO05D008541 7.6e-86 321.2 230 67.4
Peaxi162Scf00078g00341 Petunia axillaris HOM05D006690 ORTHO05D008541 7.6e-86 321.2 233 70.4
Thecc.08G174200 Theobroma cacao HOM05D006690 ORTHO05D008541 9.9e-86 320.9 233 66.5
Psat0s3069g0040 Pisum sativum HOM05D006690 ORTHO05D008541 1.7e-85 320.1 230 67.8
Sabra19G0085000 Salix brachista HOM05D006690 ORTHO05D008541 1.7e-85 320.1 267 63.7
unitig_8.g4892 Utricularia gibba HOM05D006690 ORTHO05D008541 3.8e-85 318.9 231 67.1
Sed0015713 Sechium edule HOM05D006690 ORTHO05D008541 6.4e-85 318.2 228 68.0
Medtr5g008750 Medicago truncatula HOM05D006690 ORTHO05D008541 8.4e-85 317.8 233 67.4
Migut.C01361 Erythranthe guttata HOM05D006690 ORTHO05D008541 1.1e-84 317.4 243 65.0
Phvul.002G035200 Phaseolus vulgaris HOM05D006690 ORTHO05D008541 1.1e-84 317.4 201 76.6
Rhsim12G0004800 Rhododendron simsii HOM05D006690 ORTHO05D008541 1.1e-84 317.4 201 76.6
SGA_v2.0_scaffold118G32591 Striga asiatica HOM05D006690 ORTHO05D008541 1.1e-84 317.4 232 68.1
Aa31LG4G9090 Aethionema arabicum HOM05D006690 ORTHO05D008541 1.4e-84 317.0 234 66.7
A07p37760 Brassica napus HOM05D006690 ORTHO05D008541 1.4e-84 317.0 232 67.7
BraA07t31340Z Brassica rapa HOM05D006690 ORTHO05D008541 1.4e-84 317.0 232 67.7
Aqoxy5G00849 Aquilegia oxysepala HOM05D006690 ORTHO05D008541 1.9e-84 316.6 235 67.2
Sopen11g018800 Solanum pennellii HOM05D006690 ORTHO05D008541 1.9e-84 316.6 234 68.8
DCAR_017362 Daucus carota HOM05D006690 ORTHO05D008541 3.2e-84 315.8 236 66.1
MD15G1137600 Malus domestica HOM05D006690 ORTHO05D008541 4.2e-84 315.5 230 70.0
RcHm_v2.0_Chr2g0123251 Rosa chinensis HOM05D006690 ORTHO05D008541 4.2e-84 315.5 231 70.1
Solyc11g042640.2 Solanum lycopersicum HOM05D006690 ORTHO05D008541 4.2e-84 315.5 234 68.4
CARHR291180 Cardamine hirsuta HOM05D006690 ORTHO05D008541 5.5e-84 315.1 231 66.7
PGSC0003DMG400017809 Solanum tuberosum HOM05D006690 ORTHO05D008541 5.5e-84 315.1 231 69.3
SGA_v2.0_scaffold24G10633 Striga asiatica HOM05D006690 ORTHO05D008541 5.5e-84 315.1 236 66.1
Lsat_1_v5_gn_1_25180 Lactuca sativa HOM05D006690 ORTHO05D008541 9.3e-84 314.3 234 65.4
PSO170G2989 Papaver somniferum HOM05D006690 ORTHO05D008541 2.7e-83 312.8 239 64.0
CDE05G2117 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 7.9e-83 311.2 227 70.0
Carub.0002s1836 Capsella rubella HOM05D006690 ORTHO05D008541 1.0e-82 310.8 231 66.2
HanXRQChr04g0102641 Helianthus annuus HOM05D006690 ORTHO05D008541 1.0e-82 310.8 241 63.9
PSO017G7034 Papaver somniferum HOM05D006690 ORTHO05D008541 1.0e-82 310.8 239 62.8
BcaC08g46585 Brassica carinata HOM05D006690 ORTHO05D008541 1.3e-82 310.5 235 66.4
C06p45640 Brassica napus HOM05D006690 ORTHO05D008541 1.3e-82 310.5 235 66.4
AT1G71500 Arabidopsis thaliana HOM05D006690 ORTHO05D008541 1.8e-82 310.1 231 65.8
ECA247G0737 Erigeron canadensis HOM05D006690 ORTHO05D008541 2.3e-82 309.7 233 66.5
Sp5g26650 Schrenkiella parvula HOM05D006690 ORTHO05D008541 3.0e-82 309.3 232 66.8
AL2G31160 Arabidopsis lyrata HOM05D006690 ORTHO05D008541 3.9e-82 308.9 231 65.8
Prupe.1G128000 Prunus persica HOM05D006690 ORTHO05D008541 3.9e-82 308.9 230 67.0
Thhalv10018960m.g Eutrema salsugineum HOM05D006690 ORTHO05D008541 6.7e-82 308.1 231 66.7
Oeu023205.1 Olea europaea HOM05D006690 ORTHO05D008541 1.1e-81 307.4 298 55.7
FAN19G1869 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.3e-81 305.4 230 67.0
FAN23G3093 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.3e-81 305.4 230 67.0
FAN28G2783 Fragaria x ananassa HOM05D006690 ORTHO05D008541 4.3e-81 305.4 230 67.0
FAN26G2368 Fragaria x ananassa HOM05D006690 ORTHO05D008541 5.6e-81 305.1 230 67.0
Ciclev10021386m.g Citrus clementina HOM05D006690 ORTHO05D008541 7.4e-81 304.7 237 63.7
arahy.Tifrunner.gnm1.ann1.M9KTRI Arachis hypogaea HOM05D006690 ORTHO05D008541 8.2e-80 301.2 312 53.2
SEGI_25869 Sequoiadendron giganteum HOM05D006690 ORTHO05D008541 2.7e-75 286.2 235 61.3
Pp3c6_9090 Physcomitrium patens HOM05D006690 ORTHO05D008541 7.9e-67 258.1 234 53.8
FvH4_1g25280 Fragaria vesca HOM05D006690 ORTHO05D008541 1.5e-65 253.8 173 72.3
Mapoly0043s0097 Marchantia polymorpha HOM05D006690 ORTHO05D008541 2.5e-65 253.1 226 55.3
TPR.G37964 Trifolium pratense HOM05D006690 ORTHO05D008541 1.3e-64 250.8 230 57.4
AagrBONN_evm.TU.Sc2ySwM_228.501 Anthoceros agrestis HOM05D006690 ORTHO05D008541 8.2e-64 248.1 218 58.7
CDE05G3037 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 4.1e-63 245.7 209 62.2
CDE05G1864 Ceratophyllum demersum HOM05D006690 ORTHO05D008541 5.3e-63 245.4 163 74.8
SMO139G0118 Selaginella moellendorffii HOM05D006690 ORTHO05D008541 5.9e-62 241.9 202 58.9
vmacro22748 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 1.0e-58 231.1 245 53.5
Nitab4.5_0003013g0020 Nicotiana tabacum HOM05D006690 ORTHO05D008541 4.5e-54 215.7 215 55.3
Cre09.g411200 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D008541 2.2e-32 143.7 174 42.0
MCO14G230 Micromonas commoda HOM05D006690 ORTHO05D008541 3.1e-31 139.8 190 40.0
PRCOL_00001119 Prasinoderma coloniale HOM05D006690 ORTHO05D008541 2.9e-29 133.3 235 34.5
SGA_v2.0_scaffold7G03910 Striga asiatica HOM05D006690 ORTHO05D008541 9.8e-25 118.2 87 67.8
unitig_578.g16121 Utricularia gibba HOM05D006690 ORTHO05D008541 8.3e-24 115.2 131 45.0
vmacro00956 Vaccinium macrocarpon HOM05D006690 ORTHO05D008541 3.2e-23 113.2 305 33.1
QL09p003724 Quercus lobata HOM05D006690 ORTHO05D008541 2.0e-22 110.5 169 40.8
GSVIVG01034644001 Vitis vinifera HOM05D006690 ORTHO05D008541 7.3e-20 102.1 93 57.0
QL09p003744 Quercus lobata HOM05D006690 ORTHO05D008541 7.0e-15 85.5 93 49.5
MCO05G575 Micromonas commoda HOM05D006690 ORTHO05D044287 3.1e-10 70.1 160 35.0
Cre02.g093650 Chlamydomonas reinhardtii HOM05D006690 ORTHO05D044287 6.0e-06 55.8 109 32.1


User provided reference genes

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