Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.4e-129 465.7 264 100.0
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.1e-109 397.9 255 91.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.6e-93 346.7 257 76.7
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 6.8e-60 235.0 154 72.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.5e-59 231.5 161 69.6
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 9.8e-59 231.1 172 65.7
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.3e-58 230.7 170 64.7
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 3.7e-58 229.2 171 63.7
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 4.9e-58 228.8 170 65.3
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 8.3e-58 228.0 170 64.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.4e-57 226.5 171 64.3
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 2.4e-57 226.5 162 66.7
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 4.1e-57 225.7 174 63.8
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 4.1e-57 225.7 167 64.7
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.4e-57 225.3 152 69.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 9.2e-57 224.6 157 66.9
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.2e-56 224.2 173 63.0
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.6e-56 223.8 151 70.9
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.1e-56 223.4 150 72.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 2.7e-56 223.0 176 64.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.5e-56 222.6 150 70.7
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 6.0e-56 221.9 150 68.7
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 6.0e-56 221.9 175 61.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 7.8e-56 221.5 169 63.3
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 7.8e-56 221.5 165 64.8
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.0e-55 221.1 156 67.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-55 221.1 153 69.3
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.0e-55 221.1 154 68.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.3e-55 220.7 156 67.3
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.3e-55 219.9 154 68.2
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.0e-55 219.5 156 66.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 3.9e-55 219.2 158 67.7
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 6.6e-55 218.4 172 61.6
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.6e-55 218.4 170 64.1
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.1e-54 217.6 151 69.5
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.5e-54 217.2 151 69.5
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.5e-54 217.2 145 71.0
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.5e-54 217.2 178 61.2
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.5e-54 217.2 153 69.3
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.9e-54 216.9 178 63.5
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.9e-54 216.9 153 68.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.3e-54 215.7 188 58.5
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 5.6e-54 215.3 163 62.0
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 5.6e-54 215.3 157 66.2
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.6e-54 215.3 156 65.4
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 7.3e-54 214.9 157 66.9
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 7.3e-54 214.9 171 59.6
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 7.3e-54 214.9 172 61.6
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-53 214.2 141 70.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-53 214.2 141 70.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.2e-53 214.2 145 71.0
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.2e-53 214.2 153 66.7
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.6e-53 213.8 164 62.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.6e-53 213.8 164 63.4
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.6e-53 213.8 164 63.4
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.1e-53 213.4 172 62.2
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 4.7e-53 212.2 186 60.2
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 8.1e-53 211.5 176 62.5
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.1e-53 211.5 143 71.3
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 8.1e-53 211.5 171 59.6
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 8.1e-53 211.5 154 64.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 8.1e-53 211.5 151 68.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.4e-52 210.7 172 59.9
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.3e-52 209.9 167 61.7
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 4.0e-52 209.1 170 59.4
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.0e-52 209.1 153 64.1
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.2e-52 208.8 179 59.8
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.2e-52 208.8 187 56.7
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 5.2e-52 208.8 145 68.3
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 5.2e-52 208.8 172 58.1
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 6.8e-52 208.4 172 59.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 6.8e-52 208.4 158 62.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 6.8e-52 208.4 152 62.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 6.8e-52 208.4 153 67.3
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.8e-52 208.4 171 59.6
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.5e-51 207.2 170 61.8
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.5e-51 207.2 166 61.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.0e-51 206.8 154 66.2
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.6e-51 206.5 184 57.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.6e-51 206.5 184 57.1
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.4e-51 206.1 184 57.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 5.8e-51 205.3 146 66.4
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 5.8e-51 205.3 146 66.4
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 9.9e-51 204.5 169 60.4
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.3e-50 204.1 158 61.4
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.7e-50 203.8 180 58.9
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.2e-50 203.4 187 56.7
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 3.7e-50 202.6 187 56.7
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.9e-50 202.2 158 62.0
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 6.4e-50 201.8 152 65.1
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.1e-49 201.1 170 56.5
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.1e-49 201.1 133 69.2
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.1e-49 201.1 189 55.0
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.4e-49 199.9 187 54.5
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 3.2e-49 199.5 142 66.2
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 7.1e-49 198.4 155 63.2
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.0e-47 194.5 203 51.7
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 3.0e-47 193.0 151 63.6
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.5e-46 190.7 145 64.8
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.2e-45 187.6 217 48.8
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 3.6e-45 186.0 140 60.7
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 8.1e-45 184.9 135 61.5
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.4e-44 183.3 121 70.2
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 3.1e-44 183.0 118 72.0
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 5.8e-43 178.7 157 56.7
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 4.9e-42 175.6 111 73.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.0e-40 168.7 133 62.4
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 6.6e-39 165.2 153 55.6
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 8.7e-39 164.9 149 53.0
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 3.3e-38 162.9 127 62.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.1e-37 160.2 160 52.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 8.1e-37 158.3 134 56.7
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.0e-35 153.7 131 56.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.2e-32 144.4 171 45.6
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.4e-28 131.0 132 50.8
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.4e-28 130.2 107 58.9
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 9.9e-27 124.8 103 56.3
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.2e-26 123.6 95 66.3
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.9e-26 122.5 95 60.0
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 8.7e-23 111.7 118 49.2
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.6e-21 107.5 72 68.1
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 9.0e-20 101.7 88 56.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 3.4e-19 99.8 139 39.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 4.2e-17 92.8 75 61.3
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 5.5e-17 92.4 53 77.4
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.4e-12 77.8 67 58.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.4e-12 77.0 54 66.7
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.6e-08 64.3 36 75.0
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.7e-08 63.5 97 38.1
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 1.1e-06 58.2 128 32.8
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 7.4e-06 55.5 217 26.3


User provided reference genes

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