Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 1.3e-41 173.3 81 100.0
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 3.8e-33 145.2 80 75.0
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 2.7e-31 139.0 80 70.0
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 3.6e-31 138.7 80 68.8
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.3e-30 136.7 80 70.0
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.3e-30 136.0 80 67.5
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 5.1e-30 134.8 80 67.5
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 6.7e-30 134.4 80 68.8
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.1e-29 133.7 80 67.5
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.5e-29 133.3 80 66.2
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.5e-29 133.3 80 66.2
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.5e-29 133.3 80 66.2
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.9e-29 132.9 78 71.8
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 5.7e-29 131.3 80 63.8
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 5.7e-29 131.3 80 63.8
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 9.7e-29 130.6 80 66.2
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 9.7e-29 130.6 80 65.0
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 9.7e-29 130.6 80 65.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 9.7e-29 130.6 80 63.8
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 1.3e-28 130.2 80 67.5
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.8e-28 129.0 80 62.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 3.7e-28 128.6 80 66.2
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.8e-28 128.3 80 66.2
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 4.8e-28 128.3 80 66.2
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 4.8e-28 128.3 80 66.2
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 4.8e-28 128.3 80 62.5
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 4.8e-28 128.3 80 66.2
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 6.3e-28 127.9 79 62.0
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 6.3e-28 127.9 80 65.0
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 6.3e-28 127.9 80 63.8
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 8.2e-28 127.5 80 66.2
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 1.1e-27 127.1 80 63.8
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 1.8e-27 126.3 80 65.0
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 1.8e-27 126.3 80 63.8
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 2.4e-27 125.9 80 66.2
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.4e-27 125.9 80 58.8
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 3.1e-27 125.6 80 58.8
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 4.1e-27 125.2 80 62.5
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 6.9e-27 124.4 80 63.8
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 6.9e-27 124.4 80 63.8
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 6.9e-27 124.4 80 60.0
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.5e-26 123.2 80 62.5
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 1.5e-26 123.2 80 57.5
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 1.5e-26 123.2 79 63.3
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.0e-26 122.9 80 63.8
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.0e-26 122.9 80 58.8
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 4.5e-26 121.7 80 62.5
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 4.5e-26 121.7 80 58.8
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 4.5e-26 121.7 80 57.5
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 4.5e-26 121.7 92 55.4
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 7.7e-26 120.9 80 62.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 1.0e-25 120.6 80 62.5
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.0e-25 120.6 80 62.5
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.0e-25 120.6 80 62.5
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 1.0e-25 120.6 80 60.0
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 1.3e-25 120.2 80 62.5
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 1.3e-25 120.2 80 62.5
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.3e-25 120.2 80 56.2
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.7e-25 119.8 80 61.2
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 1.7e-25 119.8 80 61.2
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 2.9e-25 119.0 80 63.8
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.9e-25 119.0 80 61.2
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 3.8e-25 118.6 79 62.0
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 6.5e-25 117.9 80 60.0
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 8.5e-25 117.5 80 60.0
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 1.1e-24 117.1 80 60.0
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.1e-24 117.1 80 58.8
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 1.9e-24 116.3 80 60.0
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 1.9e-24 116.3 79 58.2
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 3.2e-24 115.5 79 59.5
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 3.2e-24 115.5 79 59.5
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 9.4e-24 114.0 81 58.0
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.2e-23 113.6 80 58.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.6e-23 113.2 80 58.8
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 2.1e-23 112.8 80 60.0
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 6.1e-23 111.3 80 57.5
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 1.5e-21 106.7 80 53.8
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 1.8e-19 99.8 63 61.9
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-19 99.8 65 61.5
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 9.1e-19 97.4 59 62.7
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 8.5e-17 90.9 80 51.2
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.5e-16 89.4 65 58.5
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.8e-14 83.2 47 63.8
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 3.9e-14 82.0 67 52.2
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 3.7e-12 75.5 68 50.0
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 1.4e-11 73.6 51 62.7
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.6e-10 70.1 80 43.8
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 2.0e-10 69.7 101 40.6
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 3.6e-07 58.9 37 67.6
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.0e-06 57.4 37 56.8
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.0e-06 55.5 80 37.5


User provided reference genes

Program Settings