Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0220300 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 4.9e-128 461.1 220 100.0
Zm00001eb090700 Zea mays HOM05D007142 ORTHO05D008983 9.4e-63 244.2 175 72.6
HPP92_004467 Vanilla planifolia HOM05D007142 ORTHO05D008983 5.7e-52 208.4 146 65.8
HPP92_004488 Vanilla planifolia HOM05D007142 ORTHO05D008983 5.7e-52 208.4 146 65.8
Mapoly0005s0008 Marchantia polymorpha HOM05D007142 ORTHO05D008983 3.1e-50 202.6 131 71.8
SalBow4G2536 Salvia bowleyana HOM05D007142 ORTHO05D008983 3.1e-50 202.6 142 66.2
arahy.Tifrunner.gnm1.ann1.J3YA34 Arachis hypogaea HOM05D007142 ORTHO05D008983 1.6e-49 200.3 144 62.5
SGA_v2.0_scaffold4519G54498 Striga asiatica HOM05D007142 ORTHO05D008983 3.5e-49 199.1 162 60.5
CAN.G201.17 Capsicum annuum HOM05D007142 ORTHO05D008983 4.5e-49 198.7 145 63.4
Ciclev10032530m.g Citrus clementina HOM05D007142 ORTHO05D008983 1.0e-48 197.6 154 61.0
Cc08_g02450 Coffea canephora HOM05D007142 ORTHO05D000161 1.0e-48 197.6 144 62.5
ClCG10G001790 Citrullus lanatus HOM05D007142 ORTHO05D008983 1.3e-48 197.2 146 62.3
Nitab4.5_0014378g0020 Nicotiana tabacum HOM05D007142 ORTHO05D008983 2.9e-48 196.1 146 63.0
Migut.F01892 Erythranthe guttata HOM05D007142 ORTHO05D008983 3.8e-48 195.7 162 59.3
PGR031G3753 Punica granatum HOM05D007142 ORTHO05D008983 6.5e-48 194.9 140 67.1
MSTRG.9125 Avicennia marina HOM05D007142 ORTHO05D008983 8.5e-48 194.5 144 66.7
MELO3C013862.2 Cucumis melo HOM05D007142 ORTHO05D008983 8.5e-48 194.5 158 58.2
Dinv28934 Davidia involucrata HOM05D007142 ORTHO05D008983 8.5e-48 194.5 146 61.6
Lalb_Chr09g0329501 Lupinus albus HOM05D007142 ORTHO05D008983 8.5e-48 194.5 144 61.1
Cpa.g.sc665.3 Carica papaya HOM05D007142 ORTHO05D008983 1.5e-47 193.7 142 66.2
GSVIVG01013184001 Vitis vinifera HOM05D007142 ORTHO05D008983 2.5e-47 193.0 145 62.8
CsaV3_3G001880 Cucumis sativus L. HOM05D007142 ORTHO05D008983 3.2e-47 192.6 137 62.8
Solyc06g061090.3 Solanum lycopersicum HOM05D007142 ORTHO05D008983 4.2e-47 192.2 144 63.9
Sopen06g021290 Solanum pennellii HOM05D007142 ORTHO05D008983 4.2e-47 192.2 144 63.9
Ah.12g054590 Amaranthus hybridus HOM05D007142 ORTHO05D008983 5.5e-47 191.8 145 61.4
Nitab4.5_0003100g0010 Nicotiana tabacum HOM05D007142 ORTHO05D008983 5.5e-47 191.8 145 62.1
SEGI_34411 Sequoiadendron giganteum HOM05D007142 ORTHO05D008983 5.5e-47 191.8 152 63.2
Atru.chr6.1752 Acer truncatum HOM05D007142 ORTHO05D008983 7.2e-47 191.4 147 63.3
vmacro00342 Vaccinium macrocarpon HOM05D007142 ORTHO05D008983 7.2e-47 191.4 146 63.0
Actinidia25952 Actinidia chinensis HOM05D007142 ORTHO05D008983 9.4e-47 191.0 144 63.2
Glyma.17G154151 Glycine max HOM05D007142 ORTHO05D008983 9.4e-47 191.0 144 61.8
Duzib205G0350 Durio zibethinus HOM05D007142 ORTHO05D008983 1.2e-46 190.7 146 62.3
Psat4g079200 Pisum sativum HOM05D007142 ORTHO05D008983 1.2e-46 190.7 147 59.2
Potri.003G089900 Populus trichocarpa HOM05D007142 ORTHO05D008983 1.2e-46 190.7 145 63.4
Manes.17G016003 Manihot esculenta HOM05D007142 ORTHO05D008983 1.6e-46 190.3 145 62.8
AUR62018753 Chenopodium quinoa HOM05D007142 ORTHO05D008983 2.1e-46 189.9 146 61.6
RcHm_v2.0_Chr7g0209181 Rosa chinensis HOM05D007142 ORTHO05D008983 2.1e-46 189.9 148 62.2
TPR.G28665 Trifolium pratense HOM05D007142 ORTHO05D008983 2.1e-46 189.9 145 60.7
EL10Ac5g12171 Beta vulgaris HOM05D007142 ORTHO05D008983 4.7e-46 188.7 145 59.3
FAN18G0559 Fragaria x ananassa HOM05D007142 ORTHO05D008983 4.7e-46 188.7 148 61.5
MD06G1031800 Malus domestica HOM05D007142 ORTHO05D008983 4.7e-46 188.7 146 61.6
QL12p006204 Quercus lobata HOM05D007142 ORTHO05D008983 4.7e-46 188.7 145 60.7
TAR629G1364 Trochodendron aralioides HOM05D007142 ORTHO05D008983 4.7e-46 188.7 142 64.1
Gohir.A08G158100 Gossypium hirsutum HOM05D007142 ORTHO05D008983 6.1e-46 188.3 143 63.6
Gorai.004G186600 Gossypium raimondii HOM05D007142 ORTHO05D008983 6.1e-46 188.3 143 63.6
Medtr4g098620 Medicago truncatula HOM05D007142 ORTHO05D008983 6.1e-46 188.3 145 60.0
Eucgr.D02183 Eucalyptus grandis HOM05D007142 ORTHO05D008983 8.0e-46 188.0 144 64.6
FAN08G2513 Fragaria x ananassa HOM05D007142 ORTHO05D008983 8.0e-46 188.0 148 60.8
Gohir.D08G178400 Gossypium hirsutum HOM05D007142 ORTHO05D008983 8.0e-46 188.0 143 63.6
Lj4g0022330 Lotus japonicus HOM05D007142 ORTHO05D008983 8.0e-46 188.0 146 60.3
COL.COLO4_17070 Corchorus olitorius HOM05D007142 ORTHO05D008983 1.0e-45 187.6 146 62.3
THA.LOC104807961 Tarenaya hassleriana HOM05D007142 ORTHO05D008983 1.0e-45 187.6 153 61.4
Aqoxy3G02453 Aquilegia oxysepala HOM05D007142 ORTHO05D008983 1.8e-45 186.8 141 63.1
CiPaw.11G091400 Carya illinoinensis HOM05D007142 ORTHO05D008983 1.8e-45 186.8 145 61.4
TWI15G0113 Tripterygium wilfordii HOM05D007142 ORTHO05D008983 1.8e-45 186.8 145 62.8
AUR62007246 Chenopodium quinoa HOM05D007142 ORTHO05D008983 3.0e-45 186.0 146 60.3
Sed0005643 Sechium edule HOM05D007142 ORTHO05D008983 3.0e-45 186.0 151 59.6
FvH4_5g21680 Fragaria vesca HOM05D007142 ORTHO05D008983 5.2e-45 185.3 148 60.8
HanXRQChr17g0535721 Helianthus annuus HOM05D007142 ORTHO05D008983 6.7e-45 184.9 141 61.0
Sp1g28380 Schrenkiella parvula HOM05D007142 ORTHO05D008983 6.7e-45 184.9 145 62.8
CANSAT21G2079 Cannabis sativa HOM05D007142 ORTHO05D008983 8.8e-45 184.5 146 57.5
Thecc.03G230800 Theobroma cacao HOM05D007142 ORTHO05D008983 1.2e-44 184.1 146 61.0
AT1G32520 Arabidopsis thaliana HOM05D007142 ORTHO05D008983 1.5e-44 183.7 146 63.0
Phvul.003G229700 Phaseolus vulgaris HOM05D007142 ORTHO05D008983 1.5e-44 183.7 141 60.3
Haze_08264 Corylus avellana HOM05D007142 ORTHO05D008983 2.0e-44 183.3 146 61.0
FAN13G1057 Fragaria x ananassa HOM05D007142 ORTHO05D008983 2.0e-44 183.3 148 60.1
Prupe.5G040300 Prunus persica HOM05D007142 ORTHO05D008983 2.0e-44 183.3 146 61.0
CDE11G1210 Ceratophyllum demersum HOM05D007142 ORTHO05D008983 2.6e-44 183.0 125 64.0
ECA246G1460 Erigeron canadensis HOM05D007142 ORTHO05D008983 2.6e-44 183.0 141 59.6
A09p33690 Brassica napus HOM05D007142 ORTHO05D008983 4.4e-44 182.2 146 63.0
VMungo0251G3176 Vigna mungo HOM05D007142 ORTHO05D008983 4.4e-44 182.2 141 60.3
Sc10g0005600 Simmondsia chinensis HOM05D007142 ORTHO05D008983 5.7e-44 181.8 124 66.9
BcaC05g27290 Brassica carinata HOM05D007142 ORTHO05D008983 7.5e-44 181.4 146 63.0
C05p31960 Brassica napus HOM05D007142 ORTHO05D008983 7.5e-44 181.4 146 63.0
BolC5t31922H Brassica oleracea HOM05D007142 ORTHO05D008983 7.5e-44 181.4 146 63.0
Lsat_1_v5_gn_3_16621 Lactuca sativa HOM05D007142 ORTHO05D008983 9.7e-44 181.0 141 59.6
BraA09t38918Z Brassica rapa HOM05D007142 ORTHO05D008983 1.3e-43 180.6 146 62.3
Aa31LG2G13430 Aethionema arabicum HOM05D007142 ORTHO05D008983 1.7e-43 180.3 146 61.6
ATR0049G055 Amborella trichopoda HOM05D007142 ORTHO05D008983 1.7e-43 180.3 140 60.7
BcaB07g32947 Brassica carinata HOM05D007142 ORTHO05D008983 1.7e-43 180.3 145 61.4
Sabra03G0059800 Salix brachista HOM05D007142 ORTHO05D008983 2.2e-43 179.9 166 56.6
CARHR031970 Cardamine hirsuta HOM05D007142 ORTHO05D008983 3.7e-43 179.1 145 63.4
Os07g0120051 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 6.3e-43 178.3 175 58.3
PSO339G0102 Papaver somniferum HOM05D007142 ORTHO05D008983 8.2e-43 177.9 148 58.1
PSO384G0274 Papaver somniferum HOM05D007142 ORTHO05D008983 1.8e-42 176.8 148 58.1
Carub.0001s3093 Capsella rubella HOM05D007142 ORTHO05D008983 2.4e-42 176.4 166 57.2
DCAR_032211 Daucus carota HOM05D007142 ORTHO05D008983 2.4e-42 176.4 146 59.6
Thhalv10008641m.g Eutrema salsugineum HOM05D007142 ORTHO05D008983 2.4e-42 176.4 145 61.4
AL1G46770 Arabidopsis lyrata HOM05D007142 ORTHO05D008983 9.1e-42 174.5 166 56.6
AagrBONN_evm.TU.Sc2ySwM_362.655 Anthoceros agrestis HOM05D007142 ORTHO05D008983 2.7e-41 172.9 158 55.7
Peaxi162Scf00603g00413 Petunia axillaris HOM05D007142 ORTHO05D008983 1.9e-39 166.8 145 55.2
PGSC0003DMG400002104 Solanum tuberosum HOM05D007142 ORTHO05D008983 7.2e-39 164.9 133 61.7
Nn6g33627 Nelumbo nucifera HOM05D007142 ORTHO05D008983 3.0e-37 159.5 111 65.8
Rhsim11G0012900 Rhododendron simsii HOM05D007142 ORTHO05D008983 4.0e-37 159.1 104 70.2
Lj2C242T12 Lonicera japonica HOM05D007142 ORTHO05D008983 5.2e-37 158.7 112 62.5
unitig_32.g11901 Utricularia gibba HOM05D007142 ORTHO05D008983 5.2e-37 158.7 104 73.1
MBI04_g22954_MAGBIO Magnolia biondii HOM05D007142 ORTHO05D008983 6.8e-37 158.3 113 64.6
FAN04G2755 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.6e-33 147.1 149 53.0
arahy.Tifrunner.gnm1.ann1.KYR2NU Arachis hypogaea HOM05D007142 ORTHO05D008983 6.1e-30 135.2 144 47.9
Os06g0318400 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 7.5e-28 128.3 103 65.0
PRCOL_00005169 Prasinoderma coloniale HOM05D007142 ORTHO05D008983 9.2e-26 121.3 138 46.4
Os11g0476333 Oryza sativa ssp. japonica HOM05D038154 ORTHO05D008983 1.5e-20 104.0 49 98.0
Os10g0197300 Oryza sativa ssp. japonica HOM05D038154 ORTHO05D008983 5.9e-17 92.0 53 81.1
MCO11G179 Micromonas commoda HOM05D007142 ORTHO05D008983 1.7e-16 90.5 112 40.2
SMO367G0110 Selaginella moellendorffii HOM05D007142 ORTHO05D008983 8.9e-13 78.2 56 66.1
Os11g0275900 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 6.0e-09 65.5 48 70.8


User provided reference genes

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