Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0214700 Oryza sativa ssp. japonica HOM05D061120 ORTHO05D299513 1.7e-117 426.0 214 100.0
Os11g0214900 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 2.6e-41 172.9 118 80.5
Os11g0214400 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 4.3e-28 129.0 117 65.8
Os11g0214100 Oryza sativa ssp. japonica HOM05D061120 ORTHO05D292949 3.9e-21 105.9 110 60.9
Zm00001eb166630 Zea mays HOM05D000180 ORTHO05D000099 4.0e-18 95.9 122 49.2
Zm00001eb118270 Zea mays HOM05D000180 ORTHO05D000099 5.8e-09 65.5 77 46.8
Medtr7g093870 Medicago truncatula HOM05D000180 ORTHO05D000099 9.9e-09 64.7 72 47.2
TPR.G13368 Trifolium pratense HOM05D000180 ORTHO05D000099 1.3e-08 64.3 72 47.2
TPR.G13359 Trifolium pratense HOM05D000180 ORTHO05D000099 2.2e-08 63.5 72 47.2
Psat3g067480 Pisum sativum HOM05D000180 ORTHO05D000099 2.9e-08 63.2 75 44.0
ECA246G2369 Erigeron canadensis HOM05D000180 ORTHO05D000099 3.8e-08 62.8 78 44.9
TAR629G1204 Trochodendron aralioides HOM05D000180 ORTHO05D000099 3.8e-08 62.8 98 35.7
Os11g0645400 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 8.4e-08 61.6 107 41.1
vmacro23210 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 8.4e-08 61.6 76 40.8
CANSAT64G1873 Cannabis sativa HOM05D000180 ORTHO05D000099 1.9e-07 60.5 72 41.7
Gohir.A12G184300 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.9e-07 60.5 102 42.2
Lsat_1_v5_gn_1_15201 Lactuca sativa HOM05D000180 ORTHO05D000099 1.9e-07 60.5 94 38.3
MBI17_g06058_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 1.9e-07 60.5 72 41.7
Thecc.03G108200 Theobroma cacao HOM05D000180 ORTHO05D000099 1.9e-07 60.5 101 40.6
arahy.Tifrunner.gnm1.ann1.XSZG6N Arachis hypogaea HOM05D000180 ORTHO05D000099 3.2e-07 59.7 85 38.8
Gorai.008G200500 Gossypium raimondii HOM05D000180 ORTHO05D000099 3.2e-07 59.7 102 41.2
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 3.2e-07 59.7 72 43.1
Zm00001eb026860 Zea mays HOM05D000180 ORTHO05D000099 3.2e-07 59.7 95 41.1
Migut.B00112 Erythranthe guttata HOM05D000180 ORTHO05D000099 4.2e-07 59.3 73 39.7
Os11g0179700 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 4.2e-07 59.3 69 43.5
TWI79G0654 Tripterygium wilfordii HOM05D000180 ORTHO05D000099 4.2e-07 59.3 65 44.6
arahy.Tifrunner.gnm1.ann1.EFS6DB Arachis hypogaea HOM05D000180 ORTHO05D000099 7.1e-07 58.5 75 38.7
EL10Ac3g06867 Beta vulgaris HOM05D000180 ORTHO05D000099 7.1e-07 58.5 69 42.0
Os11g0180000 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 7.1e-07 58.5 74 47.3
SalBow6G4190 Salvia bowleyana HOM05D000180 ORTHO05D000099 7.1e-07 58.5 73 39.7
SGA_v2.0_scaffold58G20420 Striga asiatica HOM05D000180 ORTHO05D000099 7.1e-07 58.5 72 43.1
Zm00001eb091360 Zea mays HOM05D000180 ORTHO05D000099 7.1e-07 58.5 81 43.2
Rhsim08G0141900 Rhododendron simsii HOM05D006174 ORTHO05D007987 9.3e-07 58.2 72 41.7
arahy.Tifrunner.gnm1.ann1.VZVD9A Arachis hypogaea HOM05D000180 ORTHO05D000099 1.2e-06 57.8 75 40.0
MSTRG.5440 Avicennia marina HOM05D000180 ORTHO05D000099 1.2e-06 57.8 74 41.9
Ca_08545_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 1.2e-06 57.8 75 41.3
Haze_20043 Corylus avellana HOM05D000180 ORTHO05D000099 1.2e-06 57.8 72 41.7
Atru.chr4.1594 Acer truncatum HOM05D000180 ORTHO05D000099 1.6e-06 57.4 94 38.3
Actinidia10443 Actinidia chinensis HOM05D000180 ORTHO05D000099 1.6e-06 57.4 89 38.2
CiPaw.14G005900 Carya illinoinensis HOM05D000180 ORTHO05D000099 1.6e-06 57.4 74 43.2
Dinv04960 Davidia involucrata HOM05D000180 ORTHO05D000099 1.6e-06 57.4 113 33.6
Psat3g067360 Pisum sativum HOM05D000180 ORTHO05D000099 1.6e-06 57.4 75 41.3
QL10p020730 Quercus lobata HOM05D000180 ORTHO05D000099 1.6e-06 57.4 101 35.6
arahy.Tifrunner.gnm1.ann1.0VD1WE Arachis hypogaea HOM05D000180 ORTHO05D000099 2.1e-06 57.0 75 40.0
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 2.1e-06 57.0 73 41.1
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 2.1e-06 57.0 73 41.1
CANSAT64G2100 Cannabis sativa HOM05D000180 ORTHO05D000099 2.1e-06 57.0 72 38.9
MELO3C017251.2 Cucumis melo HOM05D000180 ORTHO05D000099 2.1e-06 57.0 72 40.3
Lj1g0027716 Lotus japonicus HOM05D000180 ORTHO05D000099 2.1e-06 57.0 72 44.4
Os07g0107300 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 2.1e-06 57.0 95 40.0
vmacro17640 Vaccinium macrocarpon HOM05D000180 ORTHO05D000099 2.1e-06 57.0 72 41.7
Zm00001eb043230 Zea mays HOM05D000180 ORTHO05D000099 2.1e-06 57.0 73 46.6
ATR0003G033 Amborella trichopoda HOM05D000180 ORTHO05D000099 2.7e-06 56.6 66 45.5
Cpa.g.sc85.39 Carica papaya HOM05D000180 ORTHO05D000099 2.7e-06 56.6 72 41.7
HanXRQChr11g0341151 Helianthus annuus HOM05D000180 ORTHO05D000099 2.7e-06 56.6 66 43.9
Lj1g0017113 Lotus japonicus HOM05D000180 ORTHO05D000099 2.7e-06 56.6 72 41.7
Sp4g00250 Schrenkiella parvula HOM05D000180 ORTHO05D000099 2.7e-06 56.6 68 39.7
TPR.G13355 Trifolium pratense HOM05D000180 ORTHO05D000099 2.7e-06 56.6 75 40.0
ATR0003G029 Amborella trichopoda HOM05D000180 ORTHO05D000099 3.5e-06 56.2 66 45.5
CiPaw.15G114000 Carya illinoinensis HOM05D000180 ORTHO05D000099 3.5e-06 56.2 95 35.8
Eucgr.L02112 Eucalyptus grandis HOM05D000180 ORTHO05D000099 3.5e-06 56.2 79 39.2
Oeu062073.1 Olea europaea HOM05D000180 ORTHO05D000099 3.5e-06 56.2 66 43.9
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 3.5e-06 56.2 75 41.3
VMungo1383G3735 Vigna mungo HOM05D000180 ORTHO05D000099 3.5e-06 56.2 75 41.3
BcaC05g26195 Brassica carinata HOM05D000180 ORTHO05D000099 4.6e-06 55.8 103 37.9
C05p22000 Brassica napus HOM05D000180 ORTHO05D000099 4.6e-06 55.8 103 37.9
CANSAT64G0386 Cannabis sativa HOM05D000180 ORTHO05D000099 4.6e-06 55.8 75 36.0
Eucgr.G00281 Eucalyptus grandis HOM05D000180 ORTHO05D000099 4.6e-06 55.8 71 43.7
ATR0003G002 Amborella trichopoda HOM05D000180 ORTHO05D000099 6.0e-06 55.5 65 44.6
PSO675G1854 Papaver somniferum HOM05D000180 ORTHO05D000099 6.0e-06 55.5 66 43.9
PSO675G2771 Papaver somniferum HOM05D000180 ORTHO05D000099 6.0e-06 55.5 66 43.9
Sed0005719 Sechium edule HOM05D000180 ORTHO05D000099 6.0e-06 55.5 86 33.7
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 6.0e-06 55.5 66 40.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 7.8e-06 55.1 73 43.8
Duzib128G0659 Durio zibethinus HOM05D000180 ORTHO05D000099 7.8e-06 55.1 72 40.3
FAN05G1771 Fragaria x ananassa HOM05D000180 ORTHO05D000099 7.8e-06 55.1 72 38.9
Glyma.03G147700 Glycine max HOM05D000180 ORTHO05D000099 7.8e-06 55.1 75 40.0
Glyma.19G151100 Glycine max HOM05D000180 ORTHO05D000099 7.8e-06 55.1 75 41.3
Glyma.19G151200 Glycine max HOM05D000180 ORTHO05D000099 7.8e-06 55.1 75 41.3
Lsat_1_v5_gn_3_45880 Lactuca sativa HOM05D000180 ORTHO05D000099 7.8e-06 55.1 65 44.6
PSO541G2136 Papaver somniferum HOM05D000180 ORTHO05D000099 7.8e-06 55.1 66 43.9
QL04p013652 Quercus lobata HOM05D000180 ORTHO05D000099 7.8e-06 55.1 97 37.1
Rhsim07G0062400 Rhododendron simsii HOM05D000180 ORTHO05D000099 7.8e-06 55.1 72 41.7
TAR628G0454 Trochodendron aralioides HOM05D000180 ORTHO05D000099 7.8e-06 55.1 82 35.4


User provided reference genes

Program Settings