Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0209700 Oryza sativa ssp. japonica HOM05D004025 ORTHO05D004929 1.9e-238 828.9 461 100.0
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 1.1e-190 670.2 440 83.6
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.0e-119 434.5 377 59.7
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.7e-119 433.7 378 60.3
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 1.4e-116 424.1 365 60.5
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 6.9e-116 421.8 372 59.7
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 2.6e-115 419.9 374 61.5
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 1.3e-114 417.5 380 57.6
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 1.7e-114 417.2 375 59.2
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 2.9e-114 416.4 370 59.7
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 6.4e-114 415.2 340 63.2
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 2.4e-113 413.3 375 58.7
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 5.4e-113 412.1 362 59.4
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 7.1e-113 411.8 372 58.3
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 7.1e-113 411.8 373 59.2
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 7.1e-113 411.8 364 58.8
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 9.3e-113 411.4 363 59.2
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 1.2e-112 411.0 373 57.1
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 4.6e-112 409.1 356 60.1
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 4.6e-112 409.1 364 58.2
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 6.0e-112 408.7 360 61.1
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 1.3e-111 407.5 360 60.8
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 3.9e-111 406.0 362 58.0
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 5.1e-111 405.6 388 56.7
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 8.7e-111 404.8 369 57.5
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 1.5e-110 404.1 381 56.7
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 2.5e-110 403.3 361 57.6
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 3.3e-110 402.9 356 59.6
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 5.6e-110 402.1 371 59.0
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 1.6e-109 400.6 357 58.5
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 2.1e-109 400.2 357 58.5
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 2.1e-109 400.2 357 58.5
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 3.6e-109 399.4 358 58.1
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.1e-108 397.9 362 58.8
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 5.3e-108 395.6 364 58.0
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 6.9e-108 395.2 437 54.5
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 6.9e-108 395.2 437 54.5
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 6.9e-108 395.2 345 59.1
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 9.0e-108 394.8 362 58.8
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 9.0e-108 394.8 362 58.6
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 1.2e-107 394.4 363 59.2
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 1.5e-107 394.0 365 56.7
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.0e-107 393.7 362 58.6
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 3.4e-107 392.9 440 55.9
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 4.5e-107 392.5 439 56.5
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 4.5e-107 392.5 364 57.7
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 9.9e-107 391.3 363 57.6
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 9.9e-107 391.3 373 57.4
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.3e-106 391.0 362 58.0
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.3e-106 391.0 362 58.0
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 2.9e-106 389.8 373 57.4
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 3.8e-106 389.4 432 56.0
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 8.4e-106 388.3 365 55.9
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 1.9e-105 387.1 358 57.8
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 2.4e-105 386.7 418 57.9
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 4.2e-105 386.0 375 55.5
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 4.2e-105 386.0 361 56.2
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 5.5e-105 385.6 354 56.5
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 7.1e-105 385.2 363 56.2
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 1.2e-104 384.4 355 56.6
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 2.1e-104 383.6 376 54.5
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 3.5e-104 382.9 357 56.6
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 3.5e-104 382.9 358 57.5
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 7.9e-104 381.7 362 54.1
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 1.3e-103 380.9 363 56.5
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.3e-103 380.9 366 56.0
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 2.3e-103 380.2 363 55.4
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 3.0e-103 379.8 437 53.5
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 6.7e-103 378.6 411 56.2
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 8.7e-103 378.3 435 54.0
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 1.1e-102 377.9 357 56.9
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.3e-101 374.4 274 67.9
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 6.2e-101 372.1 362 55.5
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 5.3e-100 369.0 359 57.4
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 9.0e-100 368.2 365 54.8
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 9.0e-100 368.2 365 54.0
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 5.8e-99 365.5 357 55.7
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 1.7e-98 364.0 326 56.7
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.8e-98 362.8 365 53.7
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 3.8e-98 362.8 360 54.2
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 4.9e-98 362.5 360 54.2
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 6.5e-98 362.1 325 57.8
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 1.4e-97 360.9 363 54.5
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 2.5e-97 360.1 342 56.4
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 3.2e-97 359.8 332 57.8
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 4.2e-97 359.4 323 59.1
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 5.5e-97 359.0 363 52.6
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 7.1e-97 358.6 468 45.7
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 1.2e-96 357.8 360 53.9
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 3.5e-96 356.3 323 58.8
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 3.5e-96 356.3 321 57.9
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 3.5e-96 356.3 532 41.5
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 4.6e-96 355.9 328 57.6
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 1.0e-95 354.8 361 53.5
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 1.0e-95 354.8 321 58.6
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 3.0e-95 353.2 325 57.2
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 3.0e-95 353.2 325 57.2
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 3.0e-95 353.2 325 57.2
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 3.0e-95 353.2 436 50.2
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 3.0e-95 353.2 317 58.7
Prupe.3G159200 Prunus persica HOM05D004025 ORTHO05D004929 5.1e-95 352.4 307 60.9
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 6.7e-95 352.1 319 58.0
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 1.5e-94 350.9 317 58.4
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 1.9e-94 350.5 316 59.2
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 3.3e-94 349.7 318 57.5
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 1.6e-93 347.4 323 56.7
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 1.6e-93 347.4 305 58.4
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 3.7e-93 346.3 438 46.8
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 1.8e-92 344.0 325 56.0
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 2.4e-92 343.6 341 52.8
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 3.1e-92 343.2 308 58.8
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 3.4e-91 339.7 323 55.4
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 4.5e-91 339.3 323 55.4
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 5.9e-91 339.0 363 53.2
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 7.6e-91 338.6 323 55.1
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.0e-90 338.2 387 50.4
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 1.0e-90 338.2 304 58.6
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.3e-90 337.8 317 57.1
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 2.2e-90 337.0 323 55.7
Nitab4.5_0005674g0020 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.1e-89 334.7 276 61.6
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 4.2e-89 332.8 303 58.4
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 5.5e-89 332.4 323 57.0
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 2.7e-88 330.1 303 57.8
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 1.0e-87 328.2 307 56.4
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 1.8e-87 327.4 329 53.2
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 1.8e-87 327.4 365 48.8
QL06p028827 Quercus lobata HOM05D004025 ORTHO05D004929 3.0e-87 326.6 288 57.3
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 1.1e-81 308.1 344 48.0
BcaC01g02666 Brassica carinata HOM05D004025 ORTHO05D004929 1.4e-79 301.2 309 54.7
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 3.3e-78 296.6 354 46.6
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 9.7e-78 295.0 343 49.0
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 1.1e-76 291.6 342 49.7
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 5.0e-74 282.7 304 49.7
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 7.9e-72 275.4 450 38.0
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 1.8e-71 274.2 366 44.5
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 3.3e-70 270.0 367 42.2
Zm00001eb326430 Zea mays HOM05D004025 ORTHO05D021029 8.2e-69 265.4 219 77.2
Zm00001eb361560 Zea mays HOM05D004025 ORTHO05D021029 8.2e-69 265.4 219 77.2
Zm00001eb027210 Zea mays HOM05D004025 ORTHO05D021029 1.1e-68 265.0 217 77.4
Zm00001eb377950 Zea mays HOM05D004025 ORTHO05D021029 1.6e-67 261.2 217 77.0
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 2.6e-67 260.4 331 43.8
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 9.4e-65 251.9 205 62.9
Nitab4.5_0002667g0030 Nicotiana tabacum HOM05D004025 ORTHO05D004929 7.5e-62 242.3 212 60.8
vmacro12810 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 7.0e-60 235.7 219 58.9
arahy.Tifrunner.gnm1.ann1.H0R63D Arachis hypogaea HOM05D004025 ORTHO05D004929 2.7e-56 223.8 206 57.8
Zm00001eb114410 Zea mays HOM05D004025 ORTHO05D021029 4.0e-55 219.9 137 78.1
VMungo1309G1675 Vigna mungo HOM05D004025 ORTHO05D004929 4.5e-51 206.5 199 55.8
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 2.9e-50 203.8 371 36.1
Ca_05857_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.5e-41 174.1 196 48.0
Zm00001eb352480 Zea mays HOM05D004025 ORTHO05D021029 8.9e-39 165.6 156 75.6
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 1.2e-32 145.2 139 55.4
arahy.Tifrunner.gnm1.ann1.EA5EP6 Arachis hypogaea HOM05D004025 ORTHO05D004929 5.0e-26 123.2 79 68.4
CDE08G0496 Ceratophyllum demersum HOM05D021779 ORTHO05D004929 1.5e-22 111.7 69 75.4
vmacro12811 Vaccinium macrocarpon HOM05D004025 ORTHO05D021029 2.7e-19 100.9 101 50.5
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.6e-16 91.7 73 63.0
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 4.7e-16 90.1 71 63.4
arahy.Tifrunner.gnm1.ann1.YT22YU Arachis hypogaea HOM05D004025 ORTHO05D004929 1.1e-15 89.0 65 63.1
arahy.Tifrunner.gnm1.ann1.AFH0P4 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.4e-15 88.6 59 64.4
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 2.0e-14 84.7 75 58.7
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 2.9e-13 80.9 113 40.7
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 1.4e-12 78.6 70 57.1
VMungo1127G1876 Vigna mungo HOM05D001773 ORTHO05D001710 5.4e-12 76.6 63 61.9
arahy.Tifrunner.gnm1.ann1.WA1G5B Arachis hypogaea HOM05D001872 ORTHO05D001859 5.1e-10 70.1 52 63.5
arahy.Tifrunner.gnm1.ann1.9PS12T Arachis hypogaea HOM05D004025 ORTHO05D004929 3.3e-09 67.4 48 64.6
arahy.Tifrunner.gnm1.ann1.2KJI71 Arachis hypogaea HOM05D003753 ORTHO05D011061 5.2e-07 60.1 33 78.8


User provided reference genes

Program Settings