Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.2e-247 859.4 431 100.0
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 2.3e-145 519.6 447 65.3
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 4.6e-82 309.3 412 43.7
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.5e-80 303.5 415 44.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 1.8e-73 280.8 419 40.1
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 7.4e-72 275.4 419 38.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 4.8e-71 272.7 409 40.1
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 3.1e-70 270.0 409 39.4
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 3.1e-70 270.0 409 40.8
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 7.7e-69 265.4 416 38.0
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.5e-67 259.2 412 39.6
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.1e-66 255.8 412 38.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.0e-65 255.0 397 39.3
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.0e-65 253.4 409 37.4
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.2e-65 252.7 399 38.3
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 5.2e-65 252.7 399 38.6
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 6.7e-65 252.3 411 39.2
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.0e-64 250.8 388 38.7
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.0e-64 250.8 408 38.7
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.0e-64 250.8 408 38.2
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.6e-64 250.4 399 38.3
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 5.7e-64 249.2 402 37.6
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 9.7e-64 248.4 439 36.0
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.7e-63 247.7 426 39.4
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.2e-63 247.3 421 37.1
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 3.7e-63 246.5 419 35.8
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 6.3e-63 245.7 408 38.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 3.1e-62 243.4 419 36.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.1e-62 243.4 411 36.3
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 5.3e-62 242.7 404 37.6
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.1e-62 241.9 418 36.4
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 9.1e-62 241.9 407 36.4
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.6e-61 241.1 420 33.8
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 3.5e-61 240.0 418 36.1
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 5.9e-61 239.2 419 35.3
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 5.9e-61 239.2 316 43.0
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 7.7e-61 238.8 421 37.3
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 7.7e-61 238.8 418 35.9
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.0e-60 238.4 418 36.1
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 1.0e-60 238.4 425 37.9
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.0e-60 238.4 459 34.2
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 1.7e-60 237.7 328 41.2
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 3.8e-60 236.5 310 42.3
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 3.8e-60 236.5 423 36.6
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.8e-60 236.5 434 36.4
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.0e-60 236.1 417 36.7
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 8.5e-60 235.3 416 36.3
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 8.5e-60 235.3 313 41.2
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 1.1e-59 235.0 420 34.3
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 1.1e-59 235.0 420 35.2
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 5.5e-59 232.6 411 35.0
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 1.2e-58 231.5 418 35.2
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.2e-58 231.5 316 42.1
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.7e-58 230.3 417 34.3
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.6e-58 229.9 403 37.5
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-57 228.0 422 36.3
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-57 227.3 415 35.9
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 3.0e-57 226.9 314 41.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 3.0e-57 226.9 314 42.4
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 8.8e-57 225.3 455 33.0
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 2.0e-56 224.2 414 35.0
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 3.4e-56 223.4 414 35.5
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 9.8e-56 221.9 255 45.5
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 1.7e-55 221.1 423 35.2
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 3.7e-55 219.9 312 38.8
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 6.3e-55 219.2 404 34.2
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-55 218.8 441 33.6
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-54 218.4 396 35.1
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-54 218.4 418 33.5
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 1.8e-54 217.6 396 34.3
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.8e-54 217.6 396 34.8
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.8e-54 217.6 398 35.4
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 2.4e-54 217.2 406 34.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 2.4e-54 217.2 396 34.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 2.4e-54 217.2 407 33.7
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 3.1e-54 216.9 412 34.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 5.4e-54 216.1 403 33.7
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 7.0e-54 215.7 406 33.5
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 9.1e-54 215.3 403 33.7
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.2e-53 214.9 359 37.6
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.2e-53 214.9 409 34.2
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.6e-53 214.5 403 33.5
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 1.6e-53 214.5 318 39.6
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 2.7e-53 213.8 403 33.0
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.0e-52 211.8 319 40.1
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 1.3e-52 211.5 409 34.0
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.7e-52 211.1 329 38.9
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 5.0e-52 209.5 390 37.7
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.5e-51 208.0 417 33.1
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 4.2e-51 206.5 315 35.2
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 7.2e-51 205.7 253 43.9
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 4.7e-50 203.0 256 43.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.4e-49 201.4 293 39.2
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-49 200.7 292 39.7
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.5e-48 198.0 290 40.7
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.4e-48 196.8 293 41.0
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 5.7e-48 196.1 298 39.3
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.3e-47 194.9 289 40.1
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.2e-47 194.1 320 36.2
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 2.2e-47 194.1 362 35.1
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-47 193.7 291 40.2
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 8.3e-47 192.2 254 43.7
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.1e-46 191.8 424 33.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 3.1e-46 190.3 254 42.1
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-45 187.2 261 40.6
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 4.2e-43 179.9 318 35.5
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 2.3e-41 174.1 250 41.6
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 7.5e-40 169.1 197 44.7
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 5.0e-36 156.4 207 41.5
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 4.3e-35 153.3 236 39.0
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 3.6e-34 150.2 310 31.6
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 2.3e-33 147.5 202 41.1
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 3.1e-33 147.1 262 35.5
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 7.5e-32 142.5 316 32.6
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 9.8e-32 142.1 245 35.5
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-30 137.9 195 37.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.6e-28 129.4 138 48.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.1e-25 120.6 154 40.9
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 5.2e-25 119.8 194 39.7
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 9.8e-24 115.5 157 40.1
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 1.7e-23 114.8 250 35.2
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 1.6e-21 108.2 250 32.4
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 9.5e-19 99.0 201 32.8
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 3.6e-18 97.1 231 30.7
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.4e-17 95.1 156 39.1
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-15 88.6 115 43.5
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.9e-15 86.7 119 42.0
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.7e-13 80.9 185 32.4
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 3.3e-11 73.9 126 33.3
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-10 71.6 256 24.2
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.6e-10 70.5 139 33.1
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-09 68.2 210 26.7


User provided reference genes

Program Settings