Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 8.4e-144 513.8 293 100.0
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 1.6e-54 217.2 301 50.5
Zm00001eb112640 Zea mays HOM05D007616 ORTHO05D008751 2.1e-25 120.6 228 45.6
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 2.7e-25 120.2 280 35.0
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.4e-21 107.8 272 36.0
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 1.5e-20 104.4 276 34.4
Os12g0182100 Oryza sativa ssp. japonica HOM05D052999 ORTHO05D049891 2.6e-20 103.6 261 38.7
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 5.9e-20 102.4 266 34.2
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 2.2e-19 100.5 276 33.3
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 6.5e-19 99.0 265 33.6
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.2e-18 96.3 272 33.8
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 4.2e-18 96.3 272 33.8
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 7.2e-18 95.5 272 33.8
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.6e-17 94.4 267 32.2
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 2.1e-17 94.0 276 32.2
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 2.1e-17 94.0 276 33.3
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 3.6e-17 93.2 273 32.6
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 4.6e-17 92.8 278 32.4
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 4.6e-17 92.8 266 32.7
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 4.6e-17 92.8 274 31.4
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 6.1e-17 92.4 267 33.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 7.9e-17 92.0 295 31.2
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 7.9e-17 92.0 279 33.0
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 1.8e-16 90.9 271 33.6
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 3.0e-16 90.1 269 31.2
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 3.0e-16 90.1 282 32.3
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 3.0e-16 90.1 265 29.1
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.9e-16 89.7 266 31.6
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 8.8e-16 88.6 264 31.8
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.5e-15 87.8 270 29.6
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 2.0e-15 87.4 270 29.6
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 2.5e-15 87.0 278 33.5
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 3.3e-15 86.7 262 36.6
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 4.3e-15 86.3 258 35.3
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 7.4e-15 85.5 272 30.1
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 9.7e-15 85.1 267 33.3
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.3e-14 84.7 271 30.6
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 1.3e-14 84.7 267 28.5
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.7e-14 84.3 276 29.7
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 8.2e-14 82.0 284 30.6
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.1e-13 81.6 268 30.6
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 1.1e-13 81.6 280 30.4
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.4e-13 81.3 183 36.6
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.4e-13 81.3 183 34.4
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.8e-13 80.9 268 32.5
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.4e-13 80.5 264 32.2
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 3.1e-13 80.1 275 29.1
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 3.1e-13 80.1 283 30.7
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 4.1e-13 79.7 267 29.6
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 4.1e-13 79.7 283 30.7
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 5.3e-13 79.3 288 29.2
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 1.2e-12 78.2 179 36.9
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.5e-12 77.8 285 30.2
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 2.0e-12 77.4 288 29.5
Zm00001eb408480 Zea mays HOM05D052999 ORTHO05D049891 2.6e-12 77.0 150 41.3
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.4e-12 76.6 279 27.2
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 3.4e-12 76.6 279 28.0
Zm00001eb391910 Zea mays HOM05D036147 ORTHO05D008751 4.5e-12 76.3 254 32.3
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 7.7e-12 75.5 273 28.2
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 1.7e-11 74.3 189 33.9
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 2.2e-11 73.9 266 30.1
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 5.0e-11 72.8 146 36.3
Zm00001eb243820 Zea mays HOM05D036147 ORTHO05D008751 8.5e-11 72.0 249 29.3
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 1.1e-10 71.6 280 27.5
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.9e-10 70.9 218 30.7
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 4.2e-10 69.7 268 26.9
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 9.4e-10 68.6 264 30.3
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 1.6e-09 67.8 292 28.4
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 2.1e-09 67.4 266 27.8
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.7e-09 67.0 266 29.7
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 3.6e-09 66.6 218 28.9
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 1.4e-08 64.7 274 25.5
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 1.4e-08 64.7 185 32.4
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.4e-08 64.7 293 26.6
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 1.8e-08 64.3 194 33.5
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 3.9e-08 63.2 272 27.2
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 5.1e-08 62.8 188 30.3
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 8.8e-08 62.0 196 30.6
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 1.1e-07 61.6 286 30.4
Os02g0554200 Oryza sativa ssp. japonica HOM05D036147 ORTHO05D008751 2.0e-07 60.8 162 34.6
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 2.0e-07 60.8 351 28.2


User provided reference genes

Program Settings